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04302015_20_scaffold_240

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Displaying items 1-30 of 33 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_240_1
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(119..634)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YPL7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKN00762.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
04302015_20_scaffold_240_2
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(646..1779)
DNA (1134bp) protein (378aa)
dapE; succinyl-diaminopimelate desuccinylase (EC:3.5.1.18); K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Succinyl-diaminopimelate desuccinylase n=1 Tax=Acidiphilium sp. PM RepID=F7S5D6_9PROT
04302015_20_scaffold_240_3
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1760..2599)
DNA (840bp) protein (280aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC:2.3.1.117); K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FYQ6_ACICJ
04302015_20_scaffold_240_4
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2764..3876
DNA (1113bp) protein (371aa)
Membrane protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LAQ4_9RHIZ
Membrane protein {ECO:0000313|EMBL:EIZ81629.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein
04302015_20_scaffold_240_5
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3890..4720)
DNA (831bp) protein (277aa)
Family 2 glycosyl transferase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZPT0_9PROT
Glycosyl transferase family 2 {ECO:0000313|EMBL:GAN80837.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
family 2 glycosyl transferase
04302015_20_scaffold_240_6
Legionella hackeliae, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4905..6032
DNA (1128bp) protein (376aa)
N-ethylmaleimide reductase {ECO:0000313|EMBL:CEK12024.1}; EC=1.-.-.- {ECO:0000313|EMBL:CEK12024.1};; TaxID=449 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella hackeliae.;"
NADH:flavin oxidoreductase (EC:1.1.1.1); K10680 N-ethylmaleimide reductase [EC:1.-.-.-] rbh
hypothetical protein n=1 Tax=Legionella tunisiensis RepID=UPI0003095FC7 rbh
04302015_20_scaffold_240_7
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6155..6280
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=3 Tax=Acidiphilium RepID=RL36_ACICJ
rpmJ; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
50S ribosomal protein L36 {ECO:0000255|HAMAP-Rule:MF_00251}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
04302015_20_scaffold_240_8
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6412..7848
DNA (1437bp) protein (479aa)
FAD linked oxidase domain-containing protein n=1 Tax=Acidiphilium sp. PM RepID=F7S2C8_9PROT
glcD; glycolate oxidase subunit GlcD
FAD linked oxidase domain-containing protein {ECO:0000313|EMBL:EGO96689.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_240_9
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7845..8999
DNA (1155bp) protein (385aa)
FAD linked oxidase domain-containing protein n=1 Tax=Acidiphilium sp. PM RepID=F7S2C7_9PROT
FAD linked oxidase domain-containing protein {ECO:0000313|EMBL:EGO96688.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
glcE; glycolate oxidase subunit GlcE; K11472 glycolate oxidase FAD binding subunit
04302015_20_scaffold_240_10
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9001..10326
DNA (1326bp) protein (442aa)
Uncharacterized protein n=4 Tax=Acidiphilium RepID=A5G1K7_ACICJ
glcF; glycolate oxidase iron-sulfur subunit; K11473 glycolate oxidase iron-sulfur subunit
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_20_scaffold_240_11
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10397..11182)
DNA (786bp) protein (262aa)
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EGO94695.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EGO94695.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
enoyl-CoA hydratase/isomerase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
Enoyl-CoA hydratase/isomerase n=1 Tax=Acidiphilium sp. PM RepID=F7S828_9PROT
04302015_20_scaffold_240_12
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11256..12206
DNA (951bp) protein (317aa)
iaaA; isoaspartyl peptidase (EC:3.4.19.5); K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5]
Isoaspartyl peptidase {ECO:0000313|EMBL:BAJ81108.1}; EC=3.4.19.5 {ECO:0000313|EMBL:BAJ81108.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Isoaspartyl peptidase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZ98_ACIMA
04302015_20_scaffold_240_13
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12285..13316
DNA (1032bp) protein (344aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] rbh
Aspartate-semialdehyde dehydrogenase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQC3_GRABC rbh
04302015_20_scaffold_240_14
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13412..13759)
DNA (348bp) protein (116aa)
glutathione S-transferase n=1 Tax=Gluconacetobacter europaeus RepID=UPI0002FFE7BE
Uncharacterized protein {ECO:0000313|EMBL:AHI25497.1}; TaxID=1296990 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xylinus E25.;"
hypothetical protein
04302015_20_scaffold_240_15
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13862..14587)
DNA (726bp) protein (242aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
Phospholipid/glycerol acyltransferase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G337_ACICJ
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:ABQ32269.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_240_16
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14584..15219)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IXK9_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGO95957.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_240_17
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15216..16187)
DNA (972bp) protein (324aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=A5G339_ACICJ
hypothetical protein; K09811 cell division transport system permease protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ82775.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_20_scaffold_240_18
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16180..16875)
DNA (696bp) protein (232aa)
Cell division ATP-binding protein FtsE n=3 Tax=Acidiphilium RepID=A5G340_ACICJ
ftsE; cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:ABQ32272.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_240_19
unknown

Not on your lists

17090..17617
DNA (528bp) protein (176aa)

This feature has no annotations

04302015_20_scaffold_240_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17620..17814)
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TPY1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU98915.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
04302015_20_scaffold_240_21
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18053..19105
DNA (1053bp) protein (351aa)
Membrane dipeptidase {ECO:0000313|EMBL:EGO95961.1}; EC=3.4.13.19 {ECO:0000313|EMBL:EGO95961.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
membrane dipeptidase (EC:3.4.13.19); K01273 membrane dipeptidase [EC:3.4.13.19]
Membrane dipeptidase n=1 Tax=Acidiphilium sp. PM RepID=F7S4H0_9PROT
04302015_20_scaffold_240_22
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19238..20314
DNA (1077bp) protein (359aa)
Endopeptidase degP {ECO:0000313|EMBL:AHJ61896.1}; EC=3.4.21.- {ECO:0000313|EMBL:AHJ61896.1};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
Endopeptidase degP n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVV7_GRABC
04302015_20_scaffold_240_23
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20319..21002
DNA (684bp) protein (228aa)
Two component transcriptional regulator, winged helix family n=2 Tax=Acidiphilium RepID=A5FVP3_ACICJ
two-component response regulator
Transcriptional regulatory protein CusR {ECO:0000313|EMBL:KDM68701.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_20_scaffold_240_24
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21113..22597
DNA (1485bp) protein (495aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Signal transduction histidine kinase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FVP4_ACICJ
integral membrane sensor signal transduction histidine kinase
04302015_20_scaffold_240_25
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22616..22948)
DNA (333bp) protein (111aa)
Sulfite dehydrogenase (Cytochrome) subunit SorB n=3 Tax=Acidiphilium RepID=A5FZZ8_ACICJ
sorB; sulfite--cytochrome c oxidoreductase subunit B
Uncharacterized protein {ECO:0000313|EMBL:EGO96339.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_240_26
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23064..24332)
DNA (1269bp) protein (423aa)
Sulfite--cytochrome c oxidoreductase subunit A n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J0N3_ACIMA
sorA; sulfite--cytochrome c oxidoreductase subunit A; K07147
Sulfite--cytochrome c oxidoreductase subunit A {ECO:0000313|EMBL:BAJ81569.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_20_scaffold_240_27
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24652..25776)
DNA (1125bp) protein (375aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
DNA polymerase III subunit beta n=2 Tax=Acidiphilium RepID=A5FYG4_ACICJ
04302015_20_scaffold_240_28
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25926..27398)
DNA (1473bp) protein (491aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J0G4_ACIMA
dnaA; chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_20_scaffold_240_29
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27877..28146)
DNA (270bp) protein (90aa)
30S ribosomal protein S20 n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VE99_9PROT
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=749388 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter tropicalis NBRC 101654.;"
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
04302015_20_scaffold_240_30
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28254..29027)
DNA (774bp) protein (258aa)
enoyl-CoA hydratase (EC:4.2.1.17); K01692 enoyl-CoA hydratase [EC:4.2.1.17]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000366C1C2 rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAN76655.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Displaying items 1-30 of 33 in total

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