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04302015_20_scaffold_262

Search features with annotation key words

Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_262_1
Pseudomonas mediterranea, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..336)
DNA (336bp) protein (112aa)
pyruvate carboxyltransferase; K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
Isopropylmalate/homocitrate/citramalate synthase n=1 Tax=Pseudomonas sp. GM48 RepID=J3GCV9_9PSED
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:KGU82622.1}; TaxID=1348058 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mediterranea CFBP 5447.;"
04302015_20_scaffold_262_2
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(333..1526)
DNA (1194bp) protein (398aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LY74_METRJ rbh
L-carnitine dehydratase/bile acid-inducible protein F rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:GAN51520.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
04302015_20_scaffold_262_3
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1540..2928)
DNA (1389bp) protein (463aa)
Oxidoreductase-like n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SPK5_9BRAD rbh
Oxidoreductase-like {ECO:0000313|EMBL:CCD96132.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
oxidoreductase-like protein rbh
04302015_20_scaffold_262_4
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3037..3762)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z1Y7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKN00963.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
04302015_20_scaffold_262_5
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3936..5252
DNA (1317bp) protein (439aa)
major facilitator transporter n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036C7F75 rbh
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:EKM99463.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
putative major facilitator superfamily transporter
04302015_20_scaffold_262_6
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5289..6698
DNA (1410bp) protein (470aa)
Tricarballylate dehydrogenase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YKR0_9PROT
Tricarballylate dehydrogenase {ECO:0000313|EMBL:EKM99461.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein; K13796 tricarballylate dehydrogenase
04302015_20_scaffold_262_7
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6685..7800
DNA (1116bp) protein (372aa)
Citrate utilization protein B n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YXE9_9PROT
Citrate utilization protein B {ECO:0000313|EMBL:EKM99462.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
CitB domain-containing protein
04302015_20_scaffold_262_8
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8057..8791
DNA (735bp) protein (245aa)
Haloacid dehalogenase, type II {ECO:0000313|EMBL:AIO70819.1}; EC=3.8.1.2 {ECO:0000313|EMBL:AIO70819.1};; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
dehII; haloacid dehalogenase, type II (EC:3.8.1.2) rbh
haloacid dehalogenase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A97EF rbh
04302015_20_scaffold_262_9
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8793..10106
DNA (1314bp) protein (438aa)
Amidase n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JWK8_BURP8
amidase
Amidase {ECO:0000313|EMBL:ACC75335.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
04302015_20_scaffold_262_10
unknown

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10052..10201
DNA (150bp) protein (50aa)

This feature has no annotations

04302015_20_scaffold_262_11

Not on your lists

10285..12105
DNA (1821bp) protein (607aa)
ATP-dependent DNA helicase recQ {ECO:0000313|EMBL:CBH97045.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBH97045.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase recQ n=1 Tax=mine drainage metagenome RepID=E6PQ41_9ZZZZ
04302015_20_scaffold_262_12
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12183..13211)
DNA (1029bp) protein (343aa)
Aldo/keto reductase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G2D7_ACICJ
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABQ32019.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_262_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14289..16793
DNA (2505bp) protein (835aa)
glycogen/starch/alpha-glucan phosphorylase (EC:2.4.1.1); K00688 starch phosphorylase [EC:2.4.1.1]
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EA136
04302015_20_scaffold_262_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16750..18123
DNA (1374bp) protein (458aa)
glgC; glucose-1-phosphate adenylyltransferase; K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] rbh
Glucose-1-phosphate adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_00624}; EC=2.7.7.27 {ECO:0000255|HAMAP-Rule:MF_00624};; ADP-glucose pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_00624}; Short=ADPGlc PPase {ECO:0000255|HAMAP-Rule:MF_00624};; ADP-glucose synthase {ECO:0000255|HAMAP-Rule:MF_00624}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Glucose-1-phosphate adenylyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=GLGC_RHOPB rbh
04302015_20_scaffold_262_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18124..19575
DNA (1452bp) protein (484aa)
glycogen synthase; K00703 starch synthase [EC:2.4.1.21]
Glycogen synthase {ECO:0000255|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000255|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000255|HAMAP-Rule:MF_00484}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Glycogen synthase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=GLGA_RHOP5
04302015_20_scaffold_262_16
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19572..21569
DNA (1998bp) protein (666aa)
glycogen debranching protein GlgX; K02438 glycogen operon protein GlgX [EC:3.2.1.-]
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
Glycogen debranching enzyme GlgX n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I3Q7_RHOVT
04302015_20_scaffold_262_17
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21582..22316)
DNA (735bp) protein (245aa)
Fumarylacetoacetate (FAA) hydrolase n=2 Tax=Acidiphilium RepID=F7S4A8_9PROT
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:KDM68668.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
putative fumarylpyruvate hydrolase
04302015_20_scaffold_262_18
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22282..23052)
DNA (771bp) protein (257aa)
puuD; gamma-glutamyl-gamma-aminobutyrate hydrolase (EC:3.5.1.94); K07010 putative glutamine amidotransferase
Gamma-glutamyl-gamma-aminobutyrate hydrolase n=2 Tax=Acidiphilium RepID=F0J3K2_ACIMA
Peptidase C26/glutamine amidotransferase {ECO:0000313|EMBL:GAN77838.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
04302015_20_scaffold_262_19
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23091..23810)
DNA (720bp) protein (240aa)
Outer membrane lipoprotein carrier protein LolA n=1 Tax=Acidiphilium sp. PM RepID=F7S4A6_9PROT
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
outer membrane lipoprotein carrier protein LolA
04302015_20_scaffold_262_20
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23755..24135)
DNA (381bp) protein (127aa)
Transcriptional regulator, MarR family n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVD6_GRABC
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABI61216.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
04302015_20_scaffold_262_21
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24331..25845)
DNA (1515bp) protein (505aa)
Leucyl aminopeptidase {ECO:0000313|EMBL:EGO96014.1}; EC=3.4.11.1 {ECO:0000313|EMBL:EGO96014.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1]
Leucyl aminopeptidase n=1 Tax=Acidiphilium sp. PM RepID=F7S4A4_9PROT
04302015_20_scaffold_262_22
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25793..26140)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000376EB2D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ49199.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
04302015_20_scaffold_262_23
marine gamma proteobacterium HTCC2080, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26143..26700)
DNA (558bp) protein (186aa)
5-demethoxyubiquinone hydroxylase, mitochondrial {ECO:0000256|SAAS:SAAS00231976}; EC=1.-.-.- {ECO:0000256|SAAS:SAAS00276250};; EC=1.14.13.- {ECO:0000256|SAAS:SAAS00231964};; TaxID=247639 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2080.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000378248F
coq7; Coq7 family protein
Displaying 23 items

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