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04302015_20_scaffold_279

Search features with annotation key words

Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_279_1
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..2157
DNA (2157bp) protein (719aa)
Acriflavin resistance protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XVZ9_9PROT
Acriflavin resistance protein {ECO:0000313|EMBL:EKN00765.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
multidrug efflux system protein; K07789 RND superfamily, multidrug transport protein MdtC
04302015_20_scaffold_279_2
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2154..3620
DNA (1467bp) protein (489aa)
NodT family RND efflux system outer membrane lipoprotein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZN90_9PROT
NodT family RND efflux system outer membrane lipoprotein {ECO:0000313|EMBL:EKN00766.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
NodT family RND efflux system outer membrane lipoprotein rbh
04302015_20_scaffold_279_3
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3622..4299)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI00036FD6AE
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:EGO96590.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_279_4
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4416..5756
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI000376E26F rbh
MmgE/PrpD family protein {ECO:0000313|EMBL:EGO96591.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
hypothetical protein rbh
04302015_20_scaffold_279_5
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5837..7240
DNA (1404bp) protein (468aa)
Major facilitator transporter n=2 Tax=Acidiphilium RepID=F7S2N8_9PROT rbh
putative major facilitator superfamily transporter rbh
Major facilitator transporter {ECO:0000313|EMBL:EGO96589.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_279_6
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7275..8333
DNA (1059bp) protein (353aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] rbh
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:ABQ30481.1}; EC=1.1.1.85 {ECO:0000313|EMBL:ABQ30481.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
3-isopropylmalate dehydrogenase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FXZ9_ACICJ rbh
04302015_20_scaffold_279_7
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8353..9492
DNA (1140bp) protein (380aa)
Putative AbrB protein n=2 Tax=Acidiphilium RepID=F0J3W3_ACIMA
putative AbrB protein; K07120
Putative AbrB protein {ECO:0000313|EMBL:BAJ82104.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_20_scaffold_279_8
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9589..10455
DNA (867bp) protein (289aa)
Formate/nitrite transporter n=2 Tax=Burkholderia RepID=E8YTG7_9BURK rbh
Transporter {ECO:0000313|EMBL:KDR28065.1}; TaxID=1071679 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
formate/nitrite transporter rbh
04302015_20_scaffold_279_9
unknown

Not on your lists

10718..10939
DNA (222bp) protein (74aa)

This feature has no annotations

04302015_20_scaffold_279_10
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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11100..13196
DNA (2097bp) protein (699aa)
hypothetical protein n=1 Tax=Geitlerinema sp. PCC 7105 RepID=UPI000382D4E8
PAS domain S-box {ECO:0000313|EMBL:EKQ51850.1}; TaxID=1220534 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium sp. Maddingley MBC34.;"
signal transduction histidine kinase
04302015_20_scaffold_279_11
unknown

Not on your lists

13988..14161
DNA (174bp) protein (58aa)

This feature has no annotations

04302015_20_scaffold_279_12
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14182..14613)
DNA (432bp) protein (144aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8T9_STAND
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:ADH90623.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
04302015_20_scaffold_279_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14684..15493)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036B7A96
DNA-directed RNA polymerase specialized sigma subunit {ECO:0000313|EMBL:KFC70893.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
two-component response regulator
04302015_20_scaffold_279_14
unknown

Not on your lists

15765..15980
DNA (216bp) protein (72aa)

This feature has no annotations

04302015_20_scaffold_279_15
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16003..16518
DNA (516bp) protein (172aa)
RNA polymerase sigma factor n=1 Tax=Methyloferula stellata RepID=UPI000368DC75
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
04302015_20_scaffold_279_16
Methanothermobacter thermautotrophicus, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

16572..17195
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036C47BC
sensory transduction histidine kinase
Sensory transduction histidine kinase {ECO:0000313|EMBL:AAB85613.1}; TaxID=187420 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.;" source="Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 /; JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium; thermoautotrophicum).;"
04302015_20_scaffold_279_17
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17347..18228
DNA (882bp) protein (294aa)
Beta-lactamase domain protein n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0AAF3_ALKEH rbh
Metallo-beta-lactamase {ECO:0000313|EMBL:GAJ30136.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
beta-lactamase domain-containing protein rbh
04302015_20_scaffold_279_18
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18237..19973
DNA (1737bp) protein (579aa)
ABC transporter, transmembrane region, type 1 n=2 Tax=Acidiphilium RepID=A5FZ11_ACICJ
ABC transporter; K16013 ATP-binding cassette, subfamily C, bacterial CydD
ABC transporter, transmembrane region, type 1 {ECO:0000313|EMBL:ABQ30843.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_279_19
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19961..21715
DNA (1755bp) protein (585aa)
ABC transporter permease/ATP-binding protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZ17_ACIMA
cydC; ABC transporter ATP-binding protein/permease; K16012 ATP-binding cassette, subfamily C, bacterial CydC
ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:BAJ81027.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_20_scaffold_279_20
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21819..23435
DNA (1617bp) protein (539aa)
cydA; cytochrome bd ubiquinol oxidase subunit I (EC:1.10.3.-); K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome bd-II ubiquinol oxidase subunit 1 {ECO:0000313|EMBL:KDM65241.1}; EC=1.10.3.10 {ECO:0000313|EMBL:KDM65241.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Cytochrome bd quinol oxidase subunit 1 apoprotein n=3 Tax=Acidiphilium RepID=A5FZ09_ACICJ
04302015_20_scaffold_279_21
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23448..24587
DNA (1140bp) protein (380aa)
cytochrome d ubiquinol oxidase subunit II (EC:3.1.3.1); K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome bd quinol oxidase subunit 2 apoprotein {ECO:0000313|EMBL:ABQ30840.1}; EC=1.10.3.- {ECO:0000313|EMBL:ABQ30840.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Cytochrome bd quinol oxidase subunit 2 apoprotein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FZ08_ACICJ
04302015_20_scaffold_279_22
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24601..24798
DNA (198bp) protein (66aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=A5FZ07_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ30839.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_279_23
unknown

Not on your lists

24811..24909
DNA (99bp) protein (33aa)

This feature has no annotations

04302015_20_scaffold_279_24
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24988..25191
DNA (204bp) protein (68aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037AE129
Displaying 24 items

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