ggKbase home page

04302015_20_scaffold_317

Search features with annotation key words

Displaying 26 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_317_1
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3..1169)
DNA (1167bp) protein (389aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9]
valyl-tRNA synthetase n=1 Tax=Roseomonas sp. B5 RepID=UPI0003102D24
04302015_20_scaffold_317_2
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1282..1557)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XWR6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKN01030.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein; K09991 hypothetical protein
04302015_20_scaffold_317_3
unknown

Not on your lists

comp(1661..1984)
DNA (324bp) protein (108aa)
hypothetical protein; K09991 hypothetical protein
04302015_20_scaffold_317_4
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1997..3514)
DNA (1518bp) protein (506aa)
Type I secretion outer membrane protein, TolC family n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FZF2_ACICJ
TolC family type I secretion outer membrane protein; K12340 outer membrane channel protein
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:ABQ30984.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_317_5
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3532..4272)
DNA (741bp) protein (247aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:ABI61829.1}; EC=2.1.1.77 {ECO:0000313|EMBL:ABI61829.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTM3_GRABC
04302015_20_scaffold_317_6
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4286..4828)
DNA (543bp) protein (181aa)
folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XTX4_9PROT
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:GAN81791.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
04302015_20_scaffold_317_7
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4897..5475
DNA (579bp) protein (193aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=A5FVX0_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ29752.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_317_8
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5472..6122
DNA (651bp) protein (217aa)
Uracil-DNA glycosylase superfamily n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZLP7_GLUDA
uracil-DNA glycosylase
Uracil-DNA glycosylase superfamily {ECO:0000313|EMBL:ACI50176.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
04302015_20_scaffold_317_9
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6189..7805
DNA (1617bp) protein (539aa)
Amino acid/polyamine/organocation transporter, APC superfamily n=2 Tax=Acidiphilium RepID=A5G0C6_ACICJ
Putative amino acid transporter {ECO:0000313|EMBL:KDM67023.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
putative amino acid transporter
04302015_20_scaffold_317_10
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8049..9530)
DNA (1482bp) protein (494aa)
MaoC domain-containing protein dehydratase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XQR0_9RHIZ rbh
MaoC domain-containing protein dehydratase {ECO:0000313|EMBL:EMS39913.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
MaoC domain-containing protein dehydratase
04302015_20_scaffold_317_11
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9530..9790)
DNA (261bp) protein (87aa)
Acyl carrier n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YTF9_9RHIZ
Acyl carrier protein {ECO:0000256|RuleBase:RU003545}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
acyl carrier protein; K02078 acyl carrier protein
04302015_20_scaffold_317_12
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9793..11688)
DNA (1896bp) protein (632aa)
FkbH like protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NXG9_GRAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN75873.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
FkbH-like protein rbh
04302015_20_scaffold_317_13
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11691..13667)
DNA (1977bp) protein (659aa)
Tetratricopeptide TPR_2 n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y081_9PROT
Tetratricopeptide TPR_2 {ECO:0000313|EMBL:EGY01072.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hypothetical protein
04302015_20_scaffold_317_14
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13722..15974)
DNA (2253bp) protein (751aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IFG8_METNO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACL57703.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
04302015_20_scaffold_317_15
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16269..17117)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000372CFAE rbh
DNA repair protein RadC {ECO:0000313|EMBL:EGO95556.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
hypothetical protein; K03630 DNA repair protein RadC
04302015_20_scaffold_317_16
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17204..20623)
DNA (3420bp) protein (1140aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
mfd; transcription-repair-coupling factor (EC:3.6.1.-); K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Transcription-repair-coupling factor n=3 Tax=Acidiphilium RepID=A5FZC6_ACICJ
04302015_20_scaffold_317_17
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20620..20889)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YNK7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAN78670.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
hypothetical protein; K09159 hypothetical protein
04302015_20_scaffold_317_18
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20933..22897
DNA (1965bp) protein (655aa)
ATP-dependent DNA helicase recG {ECO:0000313|EMBL:AHJ62658.1}; EC=3.6.1.- {ECO:0000313|EMBL:AHJ62658.1};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
recG; ATP-dependent DNA helicase RecG (EC:3.6.4.12); K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
ATP-dependent DNA helicase RecG n=1 Tax=Gluconobacter morbifer G707 RepID=G6XIA1_9PROT
04302015_20_scaffold_317_19
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22977..24164)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. RPE64 RepID=R4WNY9_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EWY37236.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein rbh
04302015_20_scaffold_317_20
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24243..24665
DNA (423bp) protein (141aa)
NUDIX hydrolase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XUY4_9PROT
NUDIX hydrolase {ECO:0000313|EMBL:EKN00415.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
putative hydrolase
04302015_20_scaffold_317_21
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24651..25037)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XV66_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAN79379.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
04302015_20_scaffold_317_22
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(25211..25825)
DNA (615bp) protein (205aa)
30S ribosomal protein S4 n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZMD4_9PROT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
04302015_20_scaffold_317_23
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25954..26388)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RS35_9PROT
Methylobacterium aquaticum plasmid pMaq22A_1p DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ48834.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein
04302015_20_scaffold_317_24
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26409..30101)
DNA (3693bp) protein (1231aa)
Uncharacterized protein (Fragment) n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YNV2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKN00497.1}; Flags: Fragment;; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
04302015_20_scaffold_317_25
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30223..31185
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035FD7B9
EamA-like transporter family protein {ECO:0000313|EMBL:KCB36742.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
integral membrane protein
04302015_20_scaffold_317_26
Komagataeibacter hansenii, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(31292..31597)
DNA (306bp) protein (102aa)
50S ribosomal protein L28 n=1 Tax=Gluconacetobacter hansenii ATCC 23769 RepID=D5QHG4_GLUHA
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=714995 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter hansenii ATCC 23769.;"
50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
Displaying 26 items

View Taxonomy