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04302015_20_scaffold_326

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_326_1
unknown

Not on your lists

comp(157..405)
DNA (249bp) protein (83aa)

This feature has no annotations

04302015_20_scaffold_326_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(592..1869)
DNA (1278bp) protein (426aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Transcription termination factor Rho n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BW45_GRABC
rho; transcription termination factor Rho; K03628 transcription termination factor Rho
04302015_20_scaffold_326_3
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2031..2480)
DNA (450bp) protein (150aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=A5G1D2_ACICJ
hypothetical protein; K08973 putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EGO95979.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_326_4
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2477..3148)
DNA (672bp) protein (224aa)
HAD family hydrolase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZHG7_9PROT
Hydrolase/phosphatase/phosphohexomutase {ECO:0000313|EMBL:GAN75969.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
phosphatase/phosphohexomutase family protein
04302015_20_scaffold_326_5
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3148..4257)
DNA (1110bp) protein (370aa)
hemH; ferrochelatase (EC:4.99.1.1); K01772 ferrochelatase [EC:4.99.1.1]
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Ferrochelatase n=3 Tax=Acidiphilium RepID=A5G1D4_ACICJ
04302015_20_scaffold_326_6
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4263..5321)
DNA (1059bp) protein (353aa)
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Uroporphyrinogen decarboxylase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=DCUP_ACICJ
04302015_20_scaffold_326_7
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5596..6471
DNA (876bp) protein (292aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YVV8_9PROT
hypothetical protein; K09773 hypothetical protein
04302015_20_scaffold_326_8
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7258..7614)
DNA (357bp) protein (119aa)
XRE family transcriptional regulator n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YV44_9PROT
XRE family transcriptional regulator {ECO:0000313|EMBL:EKM98908.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
HTH-type transcriptional regulator
04302015_20_scaffold_326_9
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7611..7883)
DNA (273bp) protein (91aa)
Smr domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0W5_9PROT
Smr domain protein {ECO:0000313|EMBL:EHM00847.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
Smr family protein
04302015_20_scaffold_326_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8113..8802)
DNA (690bp) protein (230aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=A5G2K4_ACICJ
Uncharacterized protein {ECO:0000313|EMBL:GAN77163.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein; K00782 hypothetical protein
04302015_20_scaffold_326_11
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8799..10217)
DNA (1419bp) protein (473aa)
Putative uncharacterized protein n=1 Tax=Acidiphilium sp. PM RepID=F7S6X5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGO95099.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
hypothetical protein
04302015_20_scaffold_326_12
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10283..10687)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Pseudomonas thermotolerans RepID=UPI00036301D1
Uncharacterized protein {ECO:0000313|EMBL:EZH78781.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
hypothetical protein
04302015_20_scaffold_326_13
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10691..11752)
DNA (1062bp) protein (354aa)
tartrate dehydrogenase/tartrate decarboxylase/D-malate dehydrogenase (EC:1.1.1.83 1.1.1.93 4.1.1.73); K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D-malate dehydrogenase {ECO:0000313|EMBL:KDM68260.1}; EC=1.1.1.83 {ECO:0000313|EMBL:KDM68260.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Tartrate dehydrogenase/tartrate decarboxylase/D-malate dehydrogenase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IXQ9_ACIMA
04302015_20_scaffold_326_14
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11759..13168)
DNA (1410bp) protein (470aa)
Amino acid permease-associated region n=3 Tax=Acidiphilium RepID=A5FW87_ACICJ
putative amino acid transporter
Amino acid permease-associated region {ECO:0000313|EMBL:EGO95171.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_326_15
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13256..14818)
DNA (1563bp) protein (521aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Lysine--tRNA ligase n=2 Tax=Acidiphilium RepID=F0IXA3_ACIMA
04302015_20_scaffold_326_16
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

15032..15712
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIM5_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
04302015_20_scaffold_326_17
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15776..18550
DNA (2775bp) protein (925aa)
helicase c2; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12]
Putative helicase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J3U1_ACIMA
Putative helicase {ECO:0000313|EMBL:BAJ79947.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_20_scaffold_326_18
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18694..19872
DNA (1179bp) protein (393aa)
o-succinylhomoserine sulfhydrylase (EC:2.5.1.-); K10764 O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
O-succinylhomoserine sulfhydrylase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YL16_9PROT
O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:EKM99551.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
04302015_20_scaffold_326_19
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19878..20777)
DNA (900bp) protein (300aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] rbh
Lipid A biosynthesis acyltransferase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZJP8_GLUDA rbh
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:ACI52850.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
04302015_20_scaffold_326_20
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20774..21724)
DNA (951bp) protein (317aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
Tetraacyldisaccharide 4'-kinase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FW89_ACICJ
04302015_20_scaffold_326_21
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21721..22002)
DNA (282bp) protein (94aa)
3-deoxy-D-manno-octulosonic-acid transferase; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
Putative 3-deoxy-D-manno-octulosonic-acid transferase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A6Q2_9PROT
Putative 3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:EHL96908.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
04302015_20_scaffold_326_22
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21983..23023)
DNA (1041bp) protein (347aa)
3-deoxy-D-manno-octulosonic-acid transferase; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
3-deoxy-D-manno-octulosonic-acid transferase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YPN5_9PROT
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:EKN00782.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
04302015_20_scaffold_326_23
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23020..23673)
DNA (654bp) protein (218aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=A5FW91_ACICJ
hypothetical protein; K09778 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ29873.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_326_24
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23705..28132)
DNA (4428bp) protein (1476aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J4M6_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ80078.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_20_scaffold_326_25
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28304..28561)
DNA (258bp) protein (86aa)
Transcriptional regulator, LysR family n=2 Tax=Acidiphilium RepID=A5FW92_ACICJ
LysR family transcriptional regulator; K04761 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABQ29874.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_326_26
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28522..29055)
DNA (534bp) protein (178aa)
Transcriptional regulator, LysR family n=2 Tax=Acidiphilium RepID=A5FW92_ACICJ
LysR family transcriptional regulator; K04761 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
LysR family transcriptional regulator {ECO:0000313|EMBL:EGO95410.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Displaying 26 items

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