ggKbase home page

04302015_20_scaffold_286

Search features with annotation key words

Displaying items 1-30 of 66 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_286_1
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..445
DNA (444bp) protein (148aa)
Acyl-CoA transferase/carnitine dehydratase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3U3_AZOS1
acyl-CoA transferase/carnitine dehydratase
Acyl-CoA transferase/carnitine dehydratase {ECO:0000313|EMBL:BAI75322.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
04302015_20_scaffold_286_2
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(788..1273)
DNA (486bp) protein (162aa)
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase n=1 Tax=Rhizobium sp. CF080 RepID=J2JUB6_9RHIZ
Class II aldolase/adducin family protein {ECO:0000313|EMBL:EUB99167.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
mtnB; methylthioribulose-1-phosphate dehydratase
04302015_20_scaffold_286_3
unknown

Not on your lists

comp(1273..1500)
DNA (228bp) protein (76aa)

This feature has no annotations

04302015_20_scaffold_286_4
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1600..2352
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00035D8A05
IclR family transcriptional regulator
Tax=RBG_16_Betaproteobacteria_64_18_curated
04302015_20_scaffold_286_5
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2433..4046
DNA (1614bp) protein (538aa)
2,4-dichlorophenol 6-monooxygenase (EC:1.14.13.20) rbh
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000373B5D7 rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
04302015_20_scaffold_286_6
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4067..4822
DNA (756bp) protein (252aa)
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase n=1 Tax=Rhizobium sp. CF080 RepID=J2IH94_9RHIZ rbh
Class II aldolase/adducin family protein {ECO:0000313|EMBL:EUB99156.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
04302015_20_scaffold_286_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4847..5869
DNA (1023bp) protein (341aa)
4-oxalomesaconate hydratase; K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] rbh
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Rhizobium sp. CF080 RepID=J2SGK9_9RHIZ rbh
Amidohydrolase 2 {ECO:0000313|EMBL:EUB99163.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
04302015_20_scaffold_286_8
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5892..7298)
DNA (1407bp) protein (469aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003632424
Major facilitator superfamily multidrug resistance transporter {ECO:0000313|EMBL:GAN81954.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
putative major facilitator superfamily transporter
04302015_20_scaffold_286_9
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7433..8089)
DNA (657bp) protein (219aa)
class II aldolase/adducin, N-terminal family protein; K01628 L-fuculose-phosphate aldolase [EC:4.1.2.17]
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000364A006
Class II aldolase/adducin, N-terminal family protein {ECO:0000313|EMBL:BAO92174.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
04302015_20_scaffold_286_10
unknown

Not on your lists

8345..8818
DNA (474bp) protein (158aa)

This feature has no annotations

04302015_20_scaffold_286_11
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9186..9650)
DNA (465bp) protein (155aa)
Iron dependent repressor n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IUL4_RHOP2
Transcriptional regulator MntR/manganese transport regulator {ECO:0000313|EMBL:GAN80720.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
manganese transport regulator MntR; K11924 DtxR family transcriptional regulator, manganese transport regulator
04302015_20_scaffold_286_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9753..11081
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Sulfobacillus thermosulfidooxidans RepID=UPI0002DA216F
Metal ion transporter, NRAMP family {ECO:0000313|EMBL:CDQ12160.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
NRAMP family metal ion transporter
04302015_20_scaffold_286_13
unknown

Not on your lists

11084..11281
DNA (198bp) protein (66aa)

This feature has no annotations

04302015_20_scaffold_286_14
unknown

Not on your lists

comp(11351..11656)
DNA (306bp) protein (102aa)

This feature has no annotations

04302015_20_scaffold_286_15
unknown

Not on your lists

comp(11830..12102)
DNA (273bp) protein (91aa)

This feature has no annotations

04302015_20_scaffold_286_16
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12221..13552)
DNA (1332bp) protein (444aa)
Putative peptidase U62 n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZG9_ACIMA
Peptidase {ECO:0000313|EMBL:KDM65616.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
putative peptidase U62; K03592 PmbA protein
04302015_20_scaffold_286_17
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13695..14960)
DNA (1266bp) protein (422aa)
processing peptidase (EC:3.4.24.64); K01412 mitochondrial processing peptidase [EC:3.4.24.64]
Processing peptidase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XQK5_9PROT
Processing peptidase {ECO:0000313|EMBL:EKM98954.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
04302015_20_scaffold_286_18
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14957..16357)
DNA (1401bp) protein (467aa)
thrC; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1]
Threonine synthase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YV95_9PROT
Threonine synthase {ECO:0000313|EMBL:GAN80503.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
04302015_20_scaffold_286_19
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16428..17576)
DNA (1149bp) protein (383aa)
putative coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Coproporphyrinogen III oxidase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YVU0_9PROT rbh
Coproporphyrinogen III oxidase HemN {ECO:0000313|EMBL:GAN80504.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
04302015_20_scaffold_286_20
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17586..17882)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XTW8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KKC27148.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
hypothetical protein
04302015_20_scaffold_286_21
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17948..18412
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas fulva (strain 12-X) RepID=F6AHL3_PSEF1
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEF20479.1}; TaxID=743720 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva (strain 12-X).;"
04302015_20_scaffold_286_22
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18816..19556
DNA (741bp) protein (247aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J3M1_ACIMA
ABC transporter {ECO:0000313|EMBL:GAN80506.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
putative ABC transporter ATP-binding protein
04302015_20_scaffold_286_23
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19553..20374
DNA (822bp) protein (274aa)
Putative ABC transporter permease protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J3M0_ACIMA
ABC transporter {ECO:0000313|EMBL:GAN80507.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
putative ABC transporter permease
04302015_20_scaffold_286_24
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20378..20998
DNA (621bp) protein (207aa)
Phosphoglycerate mutase family protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZHE1_9PROT
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EKM98950.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
phosphoglycerate mutase
04302015_20_scaffold_286_25
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21045..21719
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XQK0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKM98949.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
04302015_20_scaffold_286_26
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21919..25824
DNA (3906bp) protein (1302aa)
Putative outer membrane autotransporter barrel n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ICN6_AZOC5
outer membrane autotransporter barrel
Uncharacterized protein {ECO:0000313|EMBL:ESQ85452.1}; Flags: Fragment;; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
04302015_20_scaffold_286_27
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25878..28010
DNA (2133bp) protein (711aa)
Collagen triple helix repeat protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FXP6_ACICJ
triple helix repeat-containing collagen
Collagen triple helix repeat protein {ECO:0000313|EMBL:ABQ30378.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_286_28
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28197..29069)
DNA (873bp) protein (291aa)
Chromosome partitioning protein ParB n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YW62_9PROT
Chromosome partitioning nuclease protein ParB {ECO:0000313|EMBL:GAN79684.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
parB; chromosome partitioning protein, ParB family
04302015_20_scaffold_286_29
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29090..29893)
DNA (804bp) protein (268aa)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YJJ5_9PROT
Chromosome partitioning ATPase ParA {ECO:0000313|EMBL:GAN79683.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
parA; chromosome partitioning protein ParA; K03496 chromosome partitioning protein
04302015_20_scaffold_286_30
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29874..30449)
DNA (576bp) protein (192aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
rsmG; ribosomal RNA small subunit methyltransferase G (EC:2.1.1.-); K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZHR2_9PROT
Displaying items 1-30 of 66 in total

View Taxonomy