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04302015_20_scaffold_314

Search features with annotation key words

Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_314_1
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82..1206)
DNA (1125bp) protein (375aa)
L-allo-threonine aldolase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXD0_RHOCS rbh
L-allo-threonine aldolase rbh
L-allo-threonine aldolase {ECO:0000313|EMBL:ACJ00954.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
04302015_20_scaffold_314_2
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1338..2489)
DNA (1152bp) protein (384aa)
Major facilitator superfamily MFS_1 n=2 Tax=Acidiphilium RepID=A5FY38_ACICJ
major facilitator transporter; K08218 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
Protein AmpG {ECO:0000313|EMBL:KDM67179.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_20_scaffold_314_3
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2572..3135)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YID1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAN81877.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
04302015_20_scaffold_314_4
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3135..4100)
DNA (966bp) protein (322aa)
PSP operon transcriptional activator PspF n=1 Tax=Gluconobacter morbifer G707 RepID=G6XJD9_9PROT rbh
Transcriptional regulator PspF {ECO:0000313|EMBL:GAJ29079.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
PSP operon transcriptional activator PspF; K03974 psp operon transcriptional activator rbh
04302015_20_scaffold_314_5
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4323..4997
DNA (675bp) protein (225aa)
Transcriptional regulator of psp operon n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AH61_AZOBR
pspA; transcriptional regulator of psp operon
Phage shock protein {ECO:0000313|EMBL:AIB12941.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
04302015_20_scaffold_314_6
unknown

Not on your lists

4999..5223
DNA (225bp) protein (75aa)

This feature has no annotations

04302015_20_scaffold_314_7
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5270..5530
DNA (261bp) protein (87aa)
Phage shock protein B n=16 Tax=Vibrio nigripulchritudo RepID=U4K4I6_9VIBR
pspB; Phage shock protein B
Phage shock protein B {ECO:0000313|EMBL:CCN41091.1}; TaxID=1238441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo FTn2.;"
04302015_20_scaffold_314_8
unknown

Not on your lists

5511..5945
DNA (435bp) protein (145aa)

This feature has no annotations

04302015_20_scaffold_314_9
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6005..7132)
DNA (1128bp) protein (376aa)
Jannaschia aquimarina strain GSW-M26 jaqu_contig000055, whole genome shotgun sequence {ECO:0000313|EMBL:KIT15229.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
04302015_20_scaffold_314_10
unknown

Not on your lists

7383..7490
DNA (108bp) protein (36aa)

This feature has no annotations

04302015_20_scaffold_314_11
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7487..8287
DNA (801bp) protein (267aa)
Transcriptional regulator, Crp/Fnr family n=2 Tax=Acidiphilium RepID=A5G0B9_ACICJ
CRP/FNR family transcriptional regulator
CRP/FNR family transcriptional regulator {ECO:0000313|EMBL:EGO93897.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_314_12
unknown

Not on your lists

comp(8451..8768)
DNA (318bp) protein (106aa)

This feature has no annotations

04302015_20_scaffold_314_13
unknown

Not on your lists

comp(8852..9169)
DNA (318bp) protein (106aa)

This feature has no annotations

04302015_20_scaffold_314_14
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9359..11014)
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003671141 rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ABG62019.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
04302015_20_scaffold_314_15
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11154..11708
DNA (555bp) protein (185aa)
Nitrogen fixing thioredoxin-like protein NifU n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YLA5_9PROT rbh
Nitrogen fixing thioredoxin-like protein NifU {ECO:0000313|EMBL:GAN80017.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
NifU domain-containing protein
04302015_20_scaffold_314_16
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11714..12301
DNA (588bp) protein (196aa)
hypothetical protein; K09019 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
Putative NADH dehydrogenase/NAD(P)H nitroreductase APM_2174 {ECO:0000256|HAMAP-Rule:MF_01204}; EC=1.-.-.- {ECO:0000256|HAMAP-Rule:MF_01204};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Putative NADH dehydrogenase/NAD(P)H nitroreductase Acry_1774 n=3 Tax=Acidiphilium RepID=A5FZE5_ACICJ
04302015_20_scaffold_314_17
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12298..12939
DNA (642bp) protein (214aa)
Peptidase M22 family protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YXA8_9PROT
Peptidase {ECO:0000313|EMBL:GAN80015.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
peptidase M22 family protein
04302015_20_scaffold_314_18
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12936..13346
DNA (411bp) protein (137aa)
ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Ribosomal protein alanine acetyltransferase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XSN2_9PROT
Ribosomal protein alanine acetyltransferase {ECO:0000313|EMBL:GAN80014.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
04302015_20_scaffold_314_19
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13488..14414
DNA (927bp) protein (309aa)
Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU004024}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU004024};; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
cytochrome c oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit 2 n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XSF9_9PROT rbh
04302015_20_scaffold_314_20
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14426..16096
DNA (1671bp) protein (557aa)
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase subunit I n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZJF3_9PROT rbh
Cytochrome c oxidase subunit I {ECO:0000313|EMBL:EKM99560.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
04302015_20_scaffold_314_21
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16319..17230
DNA (912bp) protein (304aa)
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
Protoheme IX farnesyltransferase {ECO:0000255|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000255|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000255|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000255|HAMAP-Rule:MF_00154}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Protoheme IX farnesyltransferase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=COXX_ACICJ
04302015_20_scaffold_314_22
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17244..17414
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YXS9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKM99562.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
04302015_20_scaffold_314_23
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17442..18293
DNA (852bp) protein (284aa)
cytochrome c oxidase subunit III (EC:1.9.3.1); K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase subunit III n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YX70_9PROT rbh
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:EKM99563.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
04302015_20_scaffold_314_24
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18444..19151
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XSH8_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKM99564.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
04302015_20_scaffold_314_25
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19148..20620
DNA (1473bp) protein (491aa)
carboxypeptidase Taq (EC:3.4.17.19); K01299 carboxypeptidase Taq [EC:3.4.17.19]
Thermostable carboxypeptidase 1 n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZJI0_9PROT rbh
Thermostable carboxypeptidase 1 {ECO:0000313|EMBL:EKM99565.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
04302015_20_scaffold_314_26
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20620..20991
DNA (372bp) protein (124aa)
non-chaperonin molecular chaperone ATPase (EC:3.6.4.10); K06878 tRNA-binding protein
Non-chaperonin molecular chaperone ATPase n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CX66_9BURK
Non-chaperonin molecular chaperone ATPase {ECO:0000313|EMBL:EIJ48209.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
04302015_20_scaffold_314_27
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21007..22287
DNA (1281bp) protein (427aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
mnmE; tRNA modification GTPase MnmE (EC:3.6.-.-); K03650 tRNA modification GTPase [EC:3.6.-.-]
tRNA modification GTPase MnmE n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YXU1_9PROT rbh
04302015_20_scaffold_314_28
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22440..23186
DNA (747bp) protein (249aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FZ15_ACICJ
Oxidoreductase/SDR, 3-oxoacyl-(Acyl carrier protein) reductase {ECO:0000313|EMBL:GAN79689.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
Displaying 28 items

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