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04302015_20_scaffold_338

Search features with annotation key words

Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_338_1
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..400
DNA (399bp) protein (133aa)
Transposase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NVX0_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KHA63102.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
transposase
04302015_20_scaffold_338_2
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

810..2135
DNA (1326bp) protein (442aa)
Putative protease-like protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8B1A3_AZOBR
putative protease-like protein
Putative protease-like protein {ECO:0000313|EMBL:CCD03962.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
04302015_20_scaffold_338_3
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2308..2793
DNA (486bp) protein (162aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IK91_METNO
transposase IS116/IS110/IS902 family protein; K07486 transposase
Putative transposase y4rJ {ECO:0000313|EMBL:KDM68281.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_20_scaffold_338_4
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3029..3712
DNA (684bp) protein (228aa)
Nicotinamidase-like amidase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DA49_9BURK rbh
isochorismatase rbh
Nicotinamidase-like amidase {ECO:0000313|EMBL:EJL87794.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
04302015_20_scaffold_338_5
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3744..4763
DNA (1020bp) protein (340aa)
Putative dipeptide ABC transporter, permease protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YW72_BRASO rbh
ddpB; dipeptide ABC transporter permease rbh
Putative dipeptide ABC transporter, permease protein {ECO:0000313|EMBL:CAL78148.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
04302015_20_scaffold_338_6
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4767..5618
DNA (852bp) protein (284aa)
Putative dipeptide ABC transporter, permease protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YW71_BRASO rbh
ddpC; dipeptide ABC transporter permease rbh
Putative dipeptide ABC transporter, permease protein {ECO:0000313|EMBL:CAL78147.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
04302015_20_scaffold_338_7
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5615..6601
DNA (987bp) protein (329aa)
Oligopeptide ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JIR3_AGRRK rbh
oppD; oligopeptide ABC transporter rbh
Tax=RBG_16_Gamma2_60_9_curated
04302015_20_scaffold_338_8
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6619..7575
DNA (957bp) protein (319aa)
Putative dipeptide ABC transporter, ATP-binding protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YW69_BRASO rbh
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:EWY41653.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
dppF; dipeptide ABC transporter ATP-binding protein rbh
04302015_20_scaffold_338_9
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7572..9029
DNA (1458bp) protein (486aa)
amidase (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] rbh
Putative amidase {ECO:0000313|EMBL:CAL78144.1}; EC=3.5.1.4 {ECO:0000313|EMBL:CAL78144.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Putative amidase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YW68_BRASO rbh
04302015_20_scaffold_338_10
unknown

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9026..9148
DNA (123bp) protein (41aa)

This feature has no annotations

04302015_20_scaffold_338_11
unknown

Not on your lists

9148..9417
DNA (270bp) protein (90aa)

This feature has no annotations

04302015_20_scaffold_338_12
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9414..11030
DNA (1617bp) protein (539aa)
Putative dipeptide ABC transporter, periplasmic binding protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YW67_BRASO rbh
ddpA; peptide ABC transporter substrate-binding protein rbh
Putative dipeptide ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:CAL78143.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
04302015_20_scaffold_338_13
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11279..12133)
DNA (855bp) protein (285aa)
N-carbamyl-D-amino acid amidohydrolase (EC:3.5.1.77)
Putative hydratase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YMV3_MOBAS
Putative hydratase {ECO:0000313|EMBL:EAS51278.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
04302015_20_scaffold_338_14
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12130..13542)
DNA (1413bp) protein (471aa)
Amidase {ECO:0000313|EMBL:KDR40455.1}; Aspartyl-tRNA(Asn) amidotransferase subunit A @ Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000313|EMBL:CDY77007.1}; EC=6.3.5.6 {ECO:0000313|EMBL:CDY77007.1};; EC=6.3.5.7 {ECO:0000313|EMBL:CDY77007.1};; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
amidase (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] rbh
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003676F57 rbh
04302015_20_scaffold_338_15
unknown

Not on your lists

comp(13539..13718)
DNA (180bp) protein (60aa)

This feature has no annotations

04302015_20_scaffold_338_16
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13727..14461)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003778413
Uncharacterized protein {ECO:0000313|EMBL:GAN77140.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
04302015_20_scaffold_338_17
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14487..15194)
DNA (708bp) protein (236aa)
ABC transporter related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A863_STAND
ABC transporter branched-chain amino acid permease {ECO:0000313|EMBL:GAN77139.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
04302015_20_scaffold_338_18
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15191..17014)
DNA (1824bp) protein (608aa)
ABC transporter related n=2 Tax=Burkholderia RepID=B2SZC5_BURPP rbh
ABC transporter branched chain amino-acid permease {ECO:0000313|EMBL:GAN77138.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein rbh
04302015_20_scaffold_338_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17007..17843)
DNA (837bp) protein (279aa)
Inner-membrane translocator n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A865_STAND rbh
ABC transporter amide-urea permease {ECO:0000313|EMBL:GAN77137.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
04302015_20_scaffold_338_20
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17902..19074)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YRE7_BRASO rbh
ABC amino acid permease {ECO:0000313|EMBL:GAN77136.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
signal peptide; K01999 branched-chain amino acid transport system substrate-binding protein rbh
04302015_20_scaffold_338_21
unknown

Not on your lists

19939..20262
DNA (324bp) protein (108aa)

This feature has no annotations

04302015_20_scaffold_338_22
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

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comp(20373..20894)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DDFA22
hypothetical protein
Tax=RBG_13_Chloroflexi_68_17_curated
Displaying 22 items

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