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04302015_20_scaffold_998

Search features with annotation key words

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_998_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..307)
DNA (306bp) protein (102aa)
Tat (Twin-arginine translocation) pathway signal sequence n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HM04_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig154, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52859.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
04302015_20_scaffold_998_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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771..1823
DNA (1053bp) protein (351aa)
Alcohol dehydrogenase id=4253857 bin=GWF2_Methylomirabilis_70_14 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
alcohol dehydrogenase rbh
Tax=GWA2_Rokubacteria_70_23_curated
04302015_20_scaffold_998_3
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1820..2464
DNA (645bp) protein (215aa)
L-fuculose phosphate aldolase; K01628 L-fuculose-phosphate aldolase [EC:4.1.2.17]
Blr3542 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89PE0_BRADU
L-fuculose-1-phosphate aldolase subunit P {ECO:0000313|EMBL:BAR60786.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
04302015_20_scaffold_998_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2525..3154
DNA (630bp) protein (210aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H013_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig182, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46345.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
04302015_20_scaffold_998_5
unknown

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3607..3921
DNA (315bp) protein (105aa)

This feature has no annotations

04302015_20_scaffold_998_6
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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3945..4637
DNA (693bp) protein (231aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Caulobacter crescentus OR37 RepID=R0EEQ0_CAUCE
Heavy metal response regulator {ECO:0000313|EMBL:KFZ89828.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
04302015_20_scaffold_998_7
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4639..6033
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
Signal transduction histidine kinase n=1 Tax=Caulobacter crescentus OR37 RepID=R0EPZ1_CAUCE rbh
two-component sensor histidine kinase; putative heavy-metal sensor (Cu/Zn)
04302015_20_scaffold_998_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6030..7415
DNA (1386bp) protein (462aa)
transporter n=1 Tax=Sphingobium RepID=UPI000262B8D4 rbh
Transporter {ECO:0000313|EMBL:KFD27665.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
outer membrane efflux protein
04302015_20_scaffold_998_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7412..8443
DNA (1032bp) protein (344aa)
RND transporter n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B8D5 rbh
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:KEZ14386.1}; RND transporter {ECO:0000313|EMBL:KFD27666.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
HlyD family secretion protein
04302015_20_scaffold_998_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8440..11493
DNA (3054bp) protein (1018aa)
Acriflavin resistance protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SM89_9SPHN rbh
Efflux system protein/acriflavin resistance protein {ECO:0000313|EMBL:GAN78391.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
acriflavin resistance protein
04302015_20_scaffold_998_11
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12022..13770)
DNA (1749bp) protein (583aa)
Transporter n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BRM6_GRABC rbh
ABC transporter multidrug resistance {ECO:0000313|EMBL:GAN76442.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
transporter rbh
04302015_20_scaffold_998_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13874..14821
DNA (948bp) protein (316aa)
HpcH/HpaI aldolase; K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036ED595 rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 12 items

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