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04302015_21_scaffold_113

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_113_1
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..1358
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JIV9_BURVG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABO56212.1}; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia; cepacia (strain R1808)).;"
04302015_21_scaffold_113_2
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1371..1661
DNA (291bp) protein (97aa)
Putative transmembrane protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JIV8_BURVG
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:ABO56211.1}; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia; cepacia (strain R1808)).;"
04302015_21_scaffold_113_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1658..2086
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Pseudomonas aeruginosa RepID=UPI0002E0B45C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EVT82684.1}; TaxID=1441931 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA09.;"
04302015_21_scaffold_113_4

Not on your lists

2522..3901
DNA (1380bp) protein (460aa)
Bifunctional protein {ECO:0000313|EMBL:CBI11883.1}; EC=2.7.7.22 {ECO:0000313|EMBL:CBI11883.1};; EC=5.3.1.8 {ECO:0000313|EMBL:CBI11883.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (EC:2.7.7.13); K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] rbh
Bifunctional protein n=1 Tax=mine drainage metagenome RepID=E6QXA9_9ZZZZ rbh
04302015_21_scaffold_113_5
Yersinia mollaretii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4107..4688
DNA (582bp) protein (194aa)
ABC-type polysaccharide/polyol phosphate export system, permease component n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4S7J6_YERMO
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=349967 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia mollaretii ATCC 43969.;"
ABC transporter; K09690 lipopolysaccharide transport system permease protein
04302015_21_scaffold_113_6
Yersinia mollaretii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4691..5998
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002FF348A rbh
ABC-type polysaccharide/polyol phosphate transport system, ATPase component {ECO:0000313|EMBL:EEQ12395.1}; TaxID=349967 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia mollaretii ATCC 43969.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component rbh
04302015_21_scaffold_113_7
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6002..6523
DNA (522bp) protein (174aa)
wcaF; colanic acid biosynthesis acetyltransferase WcaF; K03818 putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-]
Bacterial transferase hexapeptide family protein n=1 Tax=Escherichia coli 2729250 RepID=N2KLS2_ECOLX
Bacterial transferase hexapeptide family protein {ECO:0000313|EMBL:EIQ21377.1}; TaxID=766150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri K-315.;"
04302015_21_scaffold_113_8
Yersinia mollaretii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6520..9375
DNA (2856bp) protein (952aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI000309CC48 rbh
Glycosyltransferase involved in cell wall bioproteinsis {ECO:0000313|EMBL:EEQ12394.1}; TaxID=349967 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia mollaretii ATCC 43969.;"
glycosyltransferase involved in cell wall bioproteinsis rbh
04302015_21_scaffold_113_9
Fusobacterium nucleatum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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9372..9752
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Fusobacterium nucleatum CTI-3 RepID=U7SZ53_FUSNU
Uncharacterized protein {ECO:0000313|EMBL:ERT40436.1}; TaxID=1204474 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium nucleatum CTI-1.;"
hypothetical protein
04302015_21_scaffold_113_10
GWA1_OP11_Woesebacteria_41_8_curated, Woesebacteria, Microgenomates, Bacteria

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9786..10535
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI00030AEBBB rbh
glycosyltransferase
Tax=GWA1_OP11_Woesebacteria_41_8_curated
04302015_21_scaffold_113_11
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10532..11650
DNA (1119bp) protein (373aa)
wecB; protein WecB (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14]
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002DA6157 rbh
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:KJZ65719.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
04302015_21_scaffold_113_12
unknown

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11647..13995
DNA (2349bp) protein (783aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002E566A8 rbh
04302015_21_scaffold_113_13
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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14003..14962
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI000381BF6D rbh
hypothetical protein; K07027
Tax=BJP_IG2102_Gammaproteobacteria_62_140
04302015_21_scaffold_113_14
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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15124..16218
DNA (1095bp) protein (365aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
GDP-mannose 4,6-dehydratase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B3F3_9PROT rbh
GDP-mannose 4,6-dehydratase rbh
04302015_21_scaffold_113_15
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16223..17158
DNA (936bp) protein (312aa)
nolK; GDP-L-fucose synthase (EC:1.1.1.271); K02377 GDP-L-fucose synthase [EC:1.1.1.271] rbh
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
GDP-L-fucose synthase n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2KC59_RHIEC rbh
04302015_21_scaffold_113_16
Yersinia mollaretii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17161..17916
DNA (756bp) protein (252aa)
Glycosyl transferase, family 2 n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4S7I2_YERMO rbh
Glycosyl transferase, family 2 {ECO:0000313|EMBL:EEQ12382.1}; TaxID=349967 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia mollaretii ATCC 43969.;"
exoU; UDP-hexose transferase rbh
04302015_21_scaffold_113_17
Yersinia mollaretii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17936..19063
DNA (1128bp) protein (376aa)
group 1 glycosyl transferase; K12995 rhamnosyltransferase [EC:2.4.1.-] rbh
Glycosyl transferase WbpZ n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4S7I1_YERMO rbh
Glycosyl transferase WbpZ {ECO:0000313|EMBL:EEQ12381.1}; TaxID=349967 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia mollaretii ATCC 43969.;"
04302015_21_scaffold_113_18
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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19159..20328
DNA (1170bp) protein (390aa)
alpha-L-glycero-D-manno-heptose alpha-1,3-glucosyltransferase (EC:2.4.1.-); K00754 [EC:2.4.1.-]
Alpha-L-glycero-D-manno-heptose alpha-1,3-glucosyltransferase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2KU85_9PROT
Alpha-L-glycero-D-manno-heptose alpha-1,3-glucosyltransferase {ECO:0000313|EMBL:EKF09234.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
04302015_21_scaffold_113_19
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20313..21254
DNA (942bp) protein (314aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LJQ0_9PROT rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EKF09235.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
nucleoside-diphosphate-sugar epimerase rbh
04302015_21_scaffold_113_20
Actinobacillus pleuropneumoniae, Actinobacillus, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21305..22153
DNA (849bp) protein (283aa)
Glycosyltransferase n=2 Tax=Actinobacillus pleuropneumoniae RepID=B3H2A4_ACTP7
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:ACE62129.1}; TaxID=537457 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus.;" source="Actinobacillus pleuropneumoniae serotype 7 (strain AP76).;"
04302015_21_scaffold_113_21
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22146..22862
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens NCIMB 11764 RepID=U7DQV1_PSEFL
Uncharacterized protein {ECO:0000313|EMBL:ERP44644.1}; TaxID=1221522 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens NCIMB 11764.;"
glycosyltransferase group 2
04302015_21_scaffold_113_22
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23024..23722
DNA (699bp) protein (233aa)
Glycosyl transferase family protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VZA8_9RHIZ
Glycosyl transferase family protein {ECO:0000313|EMBL:EJZ20318.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
glycosyl transferase family protein; K07011
04302015_21_scaffold_113_23
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23719..24663
DNA (945bp) protein (315aa)
Putative UDP-glucose 4-epimerase n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82X00_NITEU rbh
UDP-glucose 4-epimerase rbh
Putative UDP-glucose 4-epimerase {ECO:0000313|EMBL:CAD84411.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
04302015_21_scaffold_113_24
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24663..25217
DNA (555bp) protein (185aa)
Sugar transferase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EG92_9BURK
Sugar transferase {ECO:0000313|EMBL:EOA04520.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
sugar transferase
04302015_21_scaffold_113_25
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25220..26896
DNA (1677bp) protein (559aa)
capD; polysaccharide biosynthesis protein (EC:4.2.1.46)
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ADJ65691.1}; EC=4.2.1.46 {ECO:0000313|EMBL:ADJ65691.1};; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
Polysaccharide biosynthesis protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IUF9_HERSS
Displaying 25 items

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