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04302015_21_scaffold_196

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_196_1
unknown

Not on your lists

comp(1..84)
DNA (84bp) protein (28aa)

This feature has no annotations

04302015_21_scaffold_196_2
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95..2491)
DNA (2397bp) protein (799aa)
Copper-translocating P-type ATPase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SDC1_GALCS
copper-translocating P-type ATPase
Tax=GWA2_Gallionellales_59_43_curated
04302015_21_scaffold_196_3
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2502..3164)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00036CBF2C
putative response regulator
Tax=GWA2_Gallionellales_59_43_curated
04302015_21_scaffold_196_4
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3218..3595)
DNA (378bp) protein (126aa)
YHS domain protein {ECO:0000313|EMBL:GAO33956.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
YHS domain-containing protein id=12498618 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
YHS domain-containing protein
04302015_21_scaffold_196_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4119..4490)
DNA (372bp) protein (124aa)
id=4961698 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
04302015_21_scaffold_196_6
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4613..4957)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9P9S4_9BURK
hypothetical protein
Tax=RBG_16_Gallionellales_56_9_curated
04302015_21_scaffold_196_7
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5107..5445)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein PII n=1 Tax=uncultured bacterium RepID=K1YS45_9BACT
nitrogen regulatory protein P-II
Tax=RBG_16_Betaproteobacteria_56_24_curated
04302015_21_scaffold_196_8
CG_Mariprof_03, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5469..8666)
DNA (3198bp) protein (1066aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-137-C09 RepID=UPI0003641A2C rbh
CzcA family heavy metal efflux pump; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA rbh
Tax=CG_Mariprof_03
04302015_21_scaffold_196_9
CG_Mariprof_05, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8663..9949)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000379A52D rbh
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB rbh
Tax=CG_Mariprof_05
04302015_21_scaffold_196_10
CG_Gallio_02, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9942..11243)
DNA (1302bp) protein (434aa)
Outer membrane efflux protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C2F6_NITHN
outer membrane efflux protein
Tax=CG_Gallio_02
04302015_21_scaffold_196_11
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11794..12210
DNA (417bp) protein (139aa)
Transcriptional regulator, MerR family n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TMU1_TISMK
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:AFK54079.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
04302015_21_scaffold_196_12
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12421..13386)
DNA (966bp) protein (322aa)
cation transporter n=1 Tax=Pseudomonas putida RepID=UPI0002D50B5E rbh
Cation diffusion facilitator family transporter rbh
Cation transporter {ECO:0000313|EMBL:AJA14354.1}; TaxID=1215087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S12.;"
04302015_21_scaffold_196_13
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13460..13735
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI0003808DB5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI23063.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
04302015_21_scaffold_196_14
unknown

Not on your lists

comp(13723..13872)
DNA (150bp) protein (50aa)

This feature has no annotations

04302015_21_scaffold_196_15
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14513..15838
DNA (1326bp) protein (442aa)
Major facilitator superfamily MFS_1 n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T0Z4_BURPP rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACD14714.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
04302015_21_scaffold_196_16
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16261..16440)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K9G9_AZOSB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
04302015_21_scaffold_196_17
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16427..16987)
DNA (561bp) protein (187aa)
RNA polymerase sigma-24 related protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0Z7X8_9ZZZZ
RNA polymerase sigma factor {ECO:0000313|EMBL:EXI67147.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
04302015_21_scaffold_196_18
unknown

Not on your lists

17117..17251
DNA (135bp) protein (45aa)

This feature has no annotations

04302015_21_scaffold_196_19
unknown

Not on your lists

17262..17387
DNA (126bp) protein (42aa)

This feature has no annotations

04302015_21_scaffold_196_20

Not on your lists

17410..17727
DNA (318bp) protein (106aa)
Signal peptide protein n=1 Tax=uncultured bacterium RepID=K2BQ36_9BACT
Signal peptide protein {ECO:0000313|EMBL:EKD70933.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
04302015_21_scaffold_196_21
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17727..18587
DNA (861bp) protein (287aa)
UPF0276 protein WQE_40134 n=1 Tax=Burkholderia terrae BS001 RepID=I5CH91_9BURK rbh
UPF0276 protein BN874_1740007 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
h16_A1821; hypothetical protein; K09930 hypothetical protein rbh
04302015_21_scaffold_196_22
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18571..19344
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0KAP7_CUPNH
h16_A1820; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ92924.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
04302015_21_scaffold_196_23
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19341..19811
DNA (471bp) protein (157aa)
DoxX family protein n=1 Tax=Methylomonas methanica (strain MC09) RepID=F9ZYT2_METMM
DoxX family protein; K15977 putative oxidoreductase
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
04302015_21_scaffold_196_24
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19801..20454)
DNA (654bp) protein (218aa)
h16_A2208; ArsR family transcriptional regulator (EC:2.8.1.-)
Putative transcription regulatory protein, ArsR family n=1 Tax=mine drainage metagenome RepID=E6QT75_9ZZZZ rbh
Tax=RBG_16_Gallionellales_57_15_curated
04302015_21_scaffold_196_25
R_Elusimicrobia_61_10, Elusimicrobia, Bacteria

Not on your lists

20571..20918
DNA (348bp) protein (116aa)
Uncharacterized protein id=4403332 bin=GWA2__Bacteriovorax-rel_49_15 species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
ychN_[H]; DsrE family protein
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_61_10_curated
04302015_21_scaffold_196_26
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20933..21664
DNA (732bp) protein (244aa)
beta-lactamase n=1 Tax=Thioalkalivibrio RepID=UPI000375B6F4 rbh
Beta-lactamase hydrolase-like protein {ECO:0000313|EMBL:GAO32535.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
beta-lactamase rbh
04302015_21_scaffold_196_27

Not on your lists

21678..22985
DNA (1308bp) protein (436aa)
Putative Permease of the major facilitator superfamily n=1 Tax=mine drainage metagenome RepID=E6PM59_9ZZZZ rbh
Putative Permease of the major facilitator superfamily {ECO:0000313|EMBL:CBH96011.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative Permease of the major facilitator superfamily rbh
04302015_21_scaffold_196_28
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23101..23529)
DNA (429bp) protein (143aa)
Cd(II)/Pb(II)-responsive transcriptional regulator n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U0YT90_9NEIS
MerR family transcriptional regulator {ECO:0000313|EMBL:KJH65721.1}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;"
MerR family transcriptional regulator
04302015_21_scaffold_196_29
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23667..24302
DNA (636bp) protein (212aa)
Cation efflux protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K6G7_NITWC rbh
cation efflux protein rbh
Cation transporter {ECO:0000313|EMBL:KFI19541.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
04302015_21_scaffold_196_30

Not on your lists

24299..24742
DNA (444bp) protein (148aa)
Putative Divalent cation resistant determinant protein C n=1 Tax=mine drainage metagenome RepID=E6QV63_9ZZZZ
outer membrane efflux protein
Putative Divalent cation resistant determinant protein C {ECO:0000313|EMBL:CBI11136.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying items 1-30 of 33 in total

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