ggKbase home page

04302015_21_scaffold_722

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_722_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(2..325)
DNA (324bp) protein (108aa)
Putative DNA methylase, containing Zn-ribbon n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P9K4_9BACT
putative DNA methylase, containing Zn-ribbon
Putative DNA methylase, containing Zn-ribbon {ECO:0000313|EMBL:CBK39913.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
04302015_21_scaffold_722_2
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(373..1542)
DNA (1170bp) protein (390aa)
Adenine-specific DNA methylase containing a Zn-ribbon n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z2R8_9GAMM
Adenine-specific DNA methylase containing a Zn-ribbon {ECO:0000313|EMBL:EIC21654.1}; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
hypothetical protein
04302015_21_scaffold_722_3
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(1539..2219)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P9K5_9BACT rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CBK39914.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
04302015_21_scaffold_722_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(2222..5347)
DNA (3126bp) protein (1042aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P9K6_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:CBK39915.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
hypothetical protein rbh
04302015_21_scaffold_722_5
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5377..5649
DNA (273bp) protein (91aa)
ISXoo2 transposase n=1 Tax=mine drainage metagenome RepID=T0Z4R2_9ZZZZ
DDE endonuclease {ECO:0000313|EMBL:AJQ89157.1}; TaxID=129394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzicola.;"
ISXoo2 transposase, IS630 family
04302015_21_scaffold_722_6
unknown

Not on your lists

comp(6089..6934)
DNA (846bp) protein (282aa)

This feature has no annotations

04302015_21_scaffold_722_7
unknown

Not on your lists

comp(6947..7684)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A32AD
04302015_21_scaffold_722_8
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8580..9653)
DNA (1074bp) protein (358aa)
CRISPR-associated endonuclease Cas1 n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYZ2_HALNC rbh
CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1 rbh
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
04302015_21_scaffold_722_9
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9656..10282)
DNA (627bp) protein (209aa)
CRISPR-associated protein Cas4 n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYZ5_HALNC rbh
CRISPR-associated protein Cas4; K07464 putative RecB family exonuclease rbh
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
04302015_21_scaffold_722_10
unknown

Not on your lists

10328..10444
DNA (117bp) protein (39aa)

This feature has no annotations

04302015_21_scaffold_722_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10489..11703
DNA (1215bp) protein (405aa)
Transposase, mutator type n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3H7_GEOUR rbh
transposase, mutator type rbh
Transposase, mutator type {ECO:0000313|EMBL:ABQ26345.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
04302015_21_scaffold_722_12

Not on your lists

comp(11730..11852)
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PND5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH96437.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_21_scaffold_722_13

Not on your lists

comp(11849..12055)
DNA (207bp) protein (69aa)
hypothetical protein id=12494218 bin=THIO_HI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_HI organism_group=Betaproteobacteria
2-oxoisovalerate dehydrogenase, E1 component beta subunit {ECO:0000313|EMBL:EQD78848.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
Displaying 13 items

View Taxonomy