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04302015_21_scaffold_848

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_848_1
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(133..1407)
DNA (1275bp) protein (425aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
aspartokinase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000362837A
04302015_21_scaffold_848_2
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1453..4077)
DNA (2625bp) protein (875aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
alanyl-tRNA synthetase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037A6955
04302015_21_scaffold_848_3
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4165..4662)
DNA (498bp) protein (166aa)
Regulatory protein RecX n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=RECX_HALHL
recX; recombination regulator RecX; K03565 regulatory protein
Regulatory protein RecX {ECO:0000255|HAMAP-Rule:MF_01114}; TaxID=349124 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halophila (strain DSM 244 / SL1) (Ectothiorhodospira; halophila (strain DSM 244 / SL1)).;"
04302015_21_scaffold_848_4
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4634..5341)
DNA (708bp) protein (236aa)
recombinase RecA n=1 Tax=Thioalkalivibrio sp. ARh3 RepID=UPI00036186D7
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=392484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga thiooxydans.;"
recA protein; K03553 recombination protein RecA
04302015_21_scaffold_848_5
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5344..5604)
DNA (261bp) protein (87aa)
Protein RecA n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5C5G8_9GAMM
Suspect SCG annotation. See neighboring gene [04302015_21_scaffold_848_4].
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
recA; recombinase A; K03553 recombination protein RecA
04302015_21_scaffold_848_6
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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5804..6457
DNA (654bp) protein (218aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ72173.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
04302015_21_scaffold_848_7
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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6485..9061
DNA (2577bp) protein (859aa)
DNA mismatch repair protein MutS n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035C57FB
DNA mismatch repair protein MutS {ECO:0000313|EMBL:AKH21913.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
04302015_21_scaffold_848_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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9323..10126
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036C0DEF
lytT; sensory transduction protein lytT; K02477 two-component system, LytT family, response regulator
Two-component system response regulator protein {ECO:0000313|EMBL:ABC45432.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain DSM 13855 / M31).;"
04302015_21_scaffold_848_9
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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10393..11418
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Burkholderia phenoliruptrix BR3459a RepID=K0DUY3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AJE04219.1}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
hypothetical protein
04302015_21_scaffold_848_10
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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11437..12060
DNA (624bp) protein (208aa)
Cyclase/dehydrase n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=A1WU08_HALHL
cyclase/dehydrase
Cyclase/dehydrase {ECO:0000313|EMBL:ABM61170.1}; Flags: Precursor;; TaxID=349124 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halophila (strain DSM 244 / SL1) (Ectothiorhodospira; halophila (strain DSM 244 / SL1)).;"
04302015_21_scaffold_848_11
unknown

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12057..12644
DNA (588bp) protein (196aa)

This feature has no annotations

Displaying 11 items

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