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04302015_21_scaffold_50

Search features with annotation key words

Displaying items 1-30 of 184 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_50_1
unknown

Not on your lists

2..163
DNA (162bp) protein (54aa)

This feature has no annotations

04302015_21_scaffold_50_2
unknown

Not on your lists

174..353
DNA (180bp) protein (60aa)

This feature has no annotations

04302015_21_scaffold_50_3
unknown

Not on your lists

343..594
DNA (252bp) protein (84aa)

This feature has no annotations

04302015_21_scaffold_50_4
unknown

Not on your lists

1770..1862
DNA (93bp) protein (31aa)

This feature has no annotations

04302015_21_scaffold_50_trna_2
unknown

Not on your lists

comp(2055..2126)
DNA (72bp)
transferRNA
04302015_21_scaffold_50_5
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2174..3361)
DNA (1188bp) protein (396aa)
acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ABS69885.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ABS69885.1};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Acetyl-CoA acetyltransferase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPD9_XANP2 rbh
04302015_21_scaffold_50_6
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3363..4130)
DNA (768bp) protein (256aa)
fabG7; oxidoreductase (EC:1.-.-.-) rbh
Putative oxidoreductase n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X4P4_RHIFR rbh
3-hydroxy-2-methylbutyryl-CoA dehydrogenase {ECO:0000313|EMBL:ETM63721.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
04302015_21_scaffold_50_7
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4147..5856)
DNA (1710bp) protein (570aa)
AMP-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] rbh
AMP-dependent synthetase and ligase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FW66_ACICJ rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABQ29848.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_50_8
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5868..6941)
DNA (1074bp) protein (358aa)
3-hydroxyisobutyryl-CoA hydrolase {ECO:0000313|EMBL:KDM65750.1}; EC=3.1.2.4 {ECO:0000313|EMBL:KDM65750.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
enoyl-CoA hydratase/isomerase; K01692 enoyl-CoA hydratase [EC:4.2.1.17] rbh
Enoyl-CoA hydratase/isomerase n=2 Tax=Acidiphilium RepID=A5FW64_ACICJ rbh
04302015_21_scaffold_50_9
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6938..8107)
DNA (1170bp) protein (390aa)
acyl-CoA dehydrogenase domain-containing protein; K00257 [EC:1.3.99.-]
Acyl-CoA dehydrogenase domain protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FW63_ACICJ
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABQ29845.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_50_10
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8131..9051)
DNA (921bp) protein (307aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
prpB; methylisocitrate lyase (EC:4.1.3.30) rbh
Methylisocitrate lyase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZIT7_9PROT rbh
04302015_21_scaffold_50_11
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9061..10209)
DNA (1149bp) protein (383aa)
prpC; 2-methylcitrate synthase (EC:2.3.3.5) rbh
Citrate synthase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IXT5_ACIMA rbh
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_21_scaffold_50_12
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10292..11791)
DNA (1500bp) protein (500aa)
prpD; 2-methylcitrate dehydratase (EC:4.2.1.79); K01720 2-methylcitrate dehydratase [EC:4.2.1.79] rbh
2-methylcitrate dehydratase {ECO:0000313|EMBL:EGO94239.1}; EC=4.2.1.79 {ECO:0000313|EMBL:EGO94239.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
2-methylcitrate dehydratase n=3 Tax=Acidiphilium RepID=A5FW60_ACICJ rbh
04302015_21_scaffold_50_13
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12082..14466
DNA (2385bp) protein (795aa)
short-chain dehydrogenase/reductase SDR; K00046 gluconate 5-dehydrogenase [EC:1.1.1.69] rbh
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FW58_ACICJ rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABQ29840.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_50_14
unknown

Not on your lists

14541..15800
DNA (1260bp) protein (420aa)

This feature has no annotations

04302015_21_scaffold_50_15
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15814..16269)
DNA (456bp) protein (152aa)
Iron dependent repressor n=3 Tax=Acidiphilium RepID=A5G1Y6_ACICJ
DtxR family transcriptional regulator; K11924 DtxR family transcriptional regulator, manganese transport regulator
Iron dependent repressor {ECO:0000313|EMBL:ABQ31868.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_50_16
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16441..17886
DNA (1446bp) protein (482aa)
Natural resistance-associated macrophage protein n=1 Tax=Acidiphilium sp. PM RepID=F7SCB6_9PROT
Natural resistance-associated macrophage protein {ECO:0000313|EMBL:EGO93206.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
natural resistance-associated macrophage protein
04302015_21_scaffold_50_17
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17879..19120)
DNA (1242bp) protein (414aa)
Major facilitator superfamily MFS_1 n=3 Tax=Acidiphilium RepID=A5G1Y5_ACICJ rbh
major facilitator transporter; K08223 MFS transporter, FSR family, fosmidomycin resistance protein rbh
Fosmidomycin resistance protein Fsr {ECO:0000313|EMBL:KDM65326.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_50_18
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19226..20566
DNA (1341bp) protein (447aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
Glutamate--tRNA ligase 2 {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase 2 {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS 2 {ECO:0000255|HAMAP-Rule:MF_00022};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Glutamate--tRNA ligase 2 n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=SYE2_ACICJ
04302015_21_scaffold_50_19
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20626..21261)
DNA (636bp) protein (212aa)
folE; GTP cyclohydrolase (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
GTP cyclohydrolase 1 n=3 Tax=Acidiphilium RepID=A5G1W9_ACICJ
04302015_21_scaffold_50_20
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21375..21857)
DNA (483bp) protein (161aa)
Protein ApaG n=3 Tax=Acidiphilium RepID=A5G1X0_ACICJ
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
apaG; protein ApaG; K06195 ApaG protein
04302015_21_scaffold_50_21
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21911..23617
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J4Y8_ACIMA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAJ82335.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_21_scaffold_50_22
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23621..24478
DNA (858bp) protein (286aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G1X2_ACICJ
04302015_21_scaffold_50_23
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24396..29180)
DNA (4785bp) protein (1595aa)
Glutamate dehydrogenase (NAD) {ECO:0000313|EMBL:ABQ30637.1}; EC=1.4.1.2 {ECO:0000313|EMBL:ABQ30637.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
NAD-glutamate dehydrogenase; K15371 glutamate dehydrogenase [EC:1.4.1.2] rbh
Glutamate dehydrogenase (NAD) n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FYF5_ACICJ rbh
04302015_21_scaffold_50_24
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29511..31085
DNA (1575bp) protein (525aa)
leuA; 2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] rbh
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
2-isopropylmalate synthase n=3 Tax=Acidiphilium RepID=A5FVX6_ACICJ rbh
04302015_21_scaffold_50_25
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31071..31970)
DNA (900bp) protein (300aa)
alpha/beta hydrolase fold protein; K01561 haloacetate dehalogenase [EC:3.8.1.3]
Alpha/beta hydrolase fold protein n=2 Tax=Acidiphilium RepID=A5FVX7_ACICJ
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABQ29759.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_50_26
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31963..34722)
DNA (2760bp) protein (920aa)
FAD dependent oxidoreductase; K09471 gamma-glutamylputrescine oxidase [EC:1.4.3.-]
Gamma-glutamylputrescine oxidase n=2 Tax=Acidiphilium RepID=A5FVX9_ACICJ
FAD dependent oxidoreductase {ECO:0000313|EMBL:EGO96952.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_21_scaffold_50_27
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34715..36055)
DNA (1341bp) protein (447aa)
glutamate--putrescine ligase (EC:6.3.1.11); K01915 glutamine synthetase [EC:6.3.1.2]
Glutamate--putrescine ligase {ECO:0000313|EMBL:BAJ79959.1}; EC=6.3.1.11 {ECO:0000313|EMBL:BAJ79959.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Glutamate--putrescine ligase n=3 Tax=Acidiphilium RepID=A5FVY0_ACICJ
04302015_21_scaffold_50_28
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36352..37434)
DNA (1083bp) protein (361aa)
Putrescine-binding periplasmic protein n=2 Tax=Acidiphilium RepID=A5FVY1_ACICJ
extracellular solute-binding protein; K11069 spermidine/putrescine transport system substrate-binding protein
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_50_29
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37461..38300)
DNA (840bp) protein (280aa)
Binding-protein-dependent transport systems inner membrane component n=3 Tax=Acidiphilium RepID=A5FVY2_ACICJ
binding-protein-dependent transport systems inner membrane component; K11070 spermidine/putrescine transport system permease protein
Spermidine/putrescine ABC transporter permease protein {ECO:0000313|EMBL:BAJ79961.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Displaying items 1-30 of 184 in total

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