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04302015_21_scaffold_129

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_129_1
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1309
DNA (1308bp) protein (436aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
catalase-peroxidase; K03782 catalase-peroxidase [EC:1.11.1.21]
Catalase-peroxidase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TV47_9PROT
04302015_21_scaffold_129_2
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1352..2764)
DNA (1413bp) protein (471aa)
Uncharacterized protein {ECO:0000313|EMBL:GAJ28420.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
04302015_21_scaffold_129_3
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2761..3648)
DNA (888bp) protein (296aa)
Putative thiamine transport ATP-binding protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HSE2_GLUDA rbh
thiamine ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein rbh
Putative thiamine transport ATP-binding protein {ECO:0000313|EMBL:CAP57066.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
04302015_21_scaffold_129_4
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3667..4950)
DNA (1284bp) protein (428aa)
eno; enolase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11]
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Enolase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J1V3_ACIMA
04302015_21_scaffold_129_trna_1
unknown

Not on your lists

5090..5162
DNA (73bp)
transferRNA
04302015_21_scaffold_129_5
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5230..6432
DNA (1203bp) protein (401aa)
Major facilitator transporter n=2 Tax=Acidiphilium RepID=F7S2Q9_9PROT
putative major facilitator superfamily transporter; K08151 MFS transporter, DHA1 family, tetracycline resistance protein
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:BAJ82596.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_21_scaffold_129_6
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6527..7666
DNA (1140bp) protein (380aa)
Glycosyl transferase, group 1 n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z159_9PROT
Glycosyl transferase, group 1 {ECO:0000313|EMBL:EKN00914.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
glycosyl transferase family protein rbh
04302015_21_scaffold_129_7
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7706..8452
DNA (747bp) protein (249aa)
Probable transcriptional regulatory protein Acry_2907 n=3 Tax=Acidiphilium RepID=A5G2L5_ACICJ rbh
hypothetical protein rbh
Probable transcriptional regulatory protein Acry_2907 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_129_8
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8571..9257
DNA (687bp) protein (229aa)
maleylacetoacetate isomerase; K01800 maleylacetoacetate isomerase [EC:5.2.1.2]
Maleylacetoacetate isomerase n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W1Y6_9BURK
Maleylacetoacetate isomerase {ECO:0000313|EMBL:EGF31138.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
04302015_21_scaffold_129_9
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9366..9905
DNA (540bp) protein (180aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NB
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J6H5_ACIMA
04302015_21_scaffold_129_10
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9902..10525
DNA (624bp) protein (208aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
ruvA; Holliday junction ATP-dependent DNA helicase RuvA (EC:3.6.4.12); K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Acidiphilium sp. PM RepID=F7S8G6_9PROT
04302015_21_scaffold_129_11
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10522..11577
DNA (1056bp) protein (352aa)
ruvB; Holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.4.12); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] rbh
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Holliday junction ATP-dependent DNA helicase RuvB n=3 Tax=Acidiphilium RepID=A5G2L2_ACICJ rbh
04302015_21_scaffold_129_12
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11597..12106
DNA (510bp) protein (170aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Thioesterase superfamily protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G2L1_ACICJ
Thioesterase superfamily protein {ECO:0000313|EMBL:KDM66950.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_129_13
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12109..12825
DNA (717bp) protein (239aa)
Cell division and transport-associated protein TolQ n=3 Tax=Acidiphilium RepID=A5G2L0_ACICJ
tolQ; protein TolQ; K03562 biopolymer transport protein TolQ
Protein TolQ {ECO:0000313|EMBL:KDM66951.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_129_14
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12826..13269
DNA (444bp) protein (148aa)
Cell division and transport-associated protein TolR n=3 Tax=Acidiphilium RepID=A5G2K9_ACICJ
tolR; TolR protein; K03560 biopolymer transport protein TolR
Cell division and transport-associated protein TolR {ECO:0000313|EMBL:ABQ32091.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_129_15
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13330..14289
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J6G9_ACIMA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAJ82586.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_21_scaffold_129_16
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14312..15736
DNA (1425bp) protein (475aa)
Protein TolB n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G2K7_ACICJ
TolB domain-containing protein; K03641 TolB protein
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_129_17
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15755..16420
DNA (666bp) protein (222aa)
Phosphonate metabolism protein n=3 Tax=Acidithiobacillus RepID=B5ELG9_ACIF5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK80522.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
04302015_21_scaffold_129_18
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16471..17976
DNA (1506bp) protein (502aa)
4-hydroxyacetophenone monooxygenase n=1 Tax=Amycolatopsis balhimycina RepID=UPI000371A64F rbh
Putative monooxygenase {ECO:0000313|EMBL:AHH15554.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
alpha/beta hydrolase domain-containing protein
04302015_21_scaffold_129_19
R_WOR_2_48_11, WOR-2, Bacteria

Not on your lists

18020..20233
DNA (2214bp) protein (738aa)
Putative spermidine synthase with an N-terminal membrane domain id=2590861 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
putative spermidine synthase with an N-terminal membrane domain
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_48_11_curated
04302015_21_scaffold_129_20
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20224..21570)
DNA (1347bp) protein (449aa)
acetyl-CoA carboxylase biotin carboxylase subunit (EC:6.4.1.2); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Acidiphilium sp. PM RepID=F7SA85_9PROT
Acetyl-CoA carboxylase biotin carboxylase subunit {ECO:0000313|EMBL:GAN79926.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
04302015_21_scaffold_129_21
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21575..22042)
DNA (468bp) protein (156aa)
accB; acetyl-CoA carboxylase biotin carboxyl carrier protein (EC:6.4.1.2); K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
Acetyl-CoA carboxylase biotin carboxyl carrier protein {ECO:0000313|EMBL:BAJ82051.1}; EC=6.4.1.2 {ECO:0000313|EMBL:BAJ82051.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Acetyl-CoA carboxylase biotin carboxyl carrier protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J3A5_ACIMA
04302015_21_scaffold_129_22
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22039..22398)
DNA (360bp) protein (120aa)
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
3-dehydroquinate dehydratase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J3A4_ACIMA
04302015_21_scaffold_129_23
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(22395..22931)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WV25_9DELT
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
04302015_21_scaffold_129_24
unknown

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comp(22928..23173)
DNA (246bp) protein (82aa)

This feature has no annotations

04302015_21_scaffold_129_25
unknown

Not on your lists

comp(23170..23397)
DNA (228bp) protein (76aa)

This feature has no annotations

04302015_21_scaffold_129_26
unknown

Not on your lists

comp(23394..23564)
DNA (171bp) protein (57aa)

This feature has no annotations

Displaying 27 items

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