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04302015_21_scaffold_251

Search features with annotation key words

Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_251_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

187..369
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UC38_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EGP56252.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein
04302015_21_scaffold_251_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

437..679
DNA (243bp) protein (81aa)
transglycosylase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DECE6F
Transglycosylase-associated protein {ECO:0000313|EMBL:GAN77403.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
transglycosylase-associated protein
04302015_21_scaffold_251_3
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(796..1788)
DNA (993bp) protein (331aa)
delta-aminolevulinic acid dehydratase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] rbh
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Delta-aminolevulinic acid dehydratase n=3 Tax=Acidiphilium RepID=A5FUX7_ACICJ rbh
04302015_21_scaffold_251_4
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1906..2352
DNA (447bp) protein (149aa)
RpiB/LacA/LacB family sugar-phosphate isomerase; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Ribose-5-phosphate isomerase {ECO:0000313|EMBL:ABQ31323.1}; EC=5.3.1.6 {ECO:0000313|EMBL:ABQ31323.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Ribose-5-phosphate isomerase n=2 Tax=Acidiphilium RepID=A5G0E1_ACICJ
04302015_21_scaffold_251_5
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2368..3666
DNA (1299bp) protein (433aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] rbh
Serine hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000255|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000255|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000255|HAMAP-Rule:MF_00051};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Serine hydroxymethyltransferase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=GLYA_ACICJ rbh
04302015_21_scaffold_251_6
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3703..4158
DNA (456bp) protein (152aa)
Transcriptional repressor NrdR n=3 Tax=Acidiphilium RepID=NRDR_ACICJ
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_21_scaffold_251_7
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4169..5269
DNA (1101bp) protein (367aa)
ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Riboflavin biosynthesis protein RibD n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J1H0_ACIMA
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_21_scaffold_251_8
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5269..5904
DNA (636bp) protein (212aa)
ribE; riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9]
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:EGO94722.1}; EC=2.5.1.9 {ECO:0000313|EMBL:EGO94722.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Riboflavin synthase subunit alpha n=1 Tax=Acidiphilium sp. PM RepID=F7S7Z7_9PROT
04302015_21_scaffold_251_9
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5904..7073
DNA (1170bp) protein (390aa)
ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II (EC:3.5.4.25 4.1.99.12); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] rbh
Riboflavin biosynthesis protein RibBA {ECO:0000313|EMBL:KDM67033.1}; EC=3.5.4.25 {ECO:0000313|EMBL:KDM67033.1};; EC=4.1.99.12 {ECO:0000313|EMBL:KDM67033.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II n=2 Tax=Acidiphilium RepID=F0J1G8_ACIMA rbh
04302015_21_scaffold_251_10
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7070..7552
DNA (483bp) protein (161aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
6,7-dimethyl-8-ribityllumazine synthase n=3 Tax=Acidiphilium RepID=A5G0D5_ACICJ
04302015_21_scaffold_251_11
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7555..8058
DNA (504bp) protein (168aa)
NusB antitermination factor n=3 Tax=Acidiphilium RepID=A5G0D4_ACICJ
nusB; transcription antitermination protein NusB; K03625 N utilization substance protein B
N utilization substance protein B homolog {ECO:0000256|SAAS:SAAS00057003}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_21_scaffold_251_12
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8063..8998
DNA (936bp) protein (312aa)
thiL; thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Thiamine-monophosphate kinase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J1G5_ACIMA
04302015_21_scaffold_251_13
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9193..10338
DNA (1146bp) protein (382aa)
Patatin n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FVT8_ACICJ rbh
patatin; K07001 NTE family protein rbh
Patatin {ECO:0000313|EMBL:ABQ29720.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_251_14
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10355..11092
DNA (738bp) protein (246aa)
adc; putative acetoacetate decarboxylase (EC:4.1.1.4); K01574 acetoacetate decarboxylase [EC:4.1.1.4] rbh
Probable acetoacetate decarboxylase {ECO:0000256|HAMAP-Rule:MF_00597}; Short=AAD {ECO:0000256|HAMAP-Rule:MF_00597};; Short=ADC {ECO:0000256|HAMAP-Rule:MF_00597};; EC=4.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00597};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Probable acetoacetate decarboxylase n=3 Tax=Acidiphilium RepID=ADC_ACICJ rbh
04302015_21_scaffold_251_15
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11119..11901
DNA (783bp) protein (261aa)
3-hydroxybutyrate dehydrogenase (EC:1.1.1.30); K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] rbh
3-hydroxybutyrate dehydrogenase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FVT6_ACICJ rbh
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:ABQ29718.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_251_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12682..12873
DNA (192bp) protein (64aa)
GCN5-related N-acetyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07RJ6_RHOP5
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABJ05438.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
04302015_21_scaffold_251_17
unknown

Not on your lists

comp(12975..13490)
DNA (516bp) protein (172aa)

This feature has no annotations

04302015_21_scaffold_251_18
unknown

Not on your lists

comp(13738..13974)
DNA (237bp) protein (79aa)

This feature has no annotations

04302015_21_scaffold_251_19
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14289..14885
DNA (597bp) protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:AIA54081.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
04302015_21_scaffold_251_20
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15141..16244
DNA (1104bp) protein (368aa)
putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15]
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphiliu
Phosphate acyltransferase n=2 Tax=Acidiphilium RepID=PLSX_ACICJ
04302015_21_scaffold_251_21
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16247..17224
DNA (978bp) protein (326aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
fabH; 3-oxoacyl-ACP synthase III (EC:2.3.1.180); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Acidiphilium sp. PM RepID=F7S2Q0_9PROT
04302015_21_scaffold_251_22
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17287..17601
DNA (315bp) protein (105aa)
Integration host factor subunit alpha n=3 Tax=Acidiphilium RepID=A5FV64_ACICJ
ihfA; integration host factor alpha subunit; K04764 integration host factor subunit alpha
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_251_23
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17598..18116
DNA (519bp) protein (173aa)
Transcriptional regulator, MerR family n=3 Tax=Acidiphilium RepID=A5FV63_ACICJ
MerR family transcriptional regulator
Putative MerR family transcriptional regulator {ECO:0000313|EMBL:BAJ79641.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_21_scaffold_251_trna_1
unknown

Not on your lists

18164..18237
DNA (74bp)
transferRNA
04302015_21_scaffold_251_24
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18343..21645
DNA (3303bp) protein (1101aa)
Glycosyl transferase, family 2 n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G0J9_ACICJ
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABQ31381.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_251_25
unknown

Not on your lists

comp(21620..22000)
DNA (381bp) protein (127aa)

This feature has no annotations

04302015_21_scaffold_251_26
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22076..23140
DNA (1065bp) protein (355aa)
FkbH domain-containing protein n=1 Tax=Acetobacter aceti RepID=UPI000226070C rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN57040.1}; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
FkbH like protein rbh
04302015_21_scaffold_251_27
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23198..23443
DNA (246bp) protein (82aa)
Acyl carrier protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9KA99_9FIRM
Acyl carrier protein {ECO:0000313|EMBL:EWS61159.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
04302015_21_scaffold_251_28
unknown

Not on your lists

23449..24318
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DA74EA
04302015_21_scaffold_251_29
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24325..25197
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTU0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK92630.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Displaying items 1-30 of 31 in total

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