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04302015_21_scaffold_304

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_304_1
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..339)
DNA (339bp) protein (113aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01031 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
3-oxoacid CoA-transferase, A subunit {ECO:0000313|EMBL:EGO94334.1}; EC=2.8.3.6 {ECO:0000313|EMBL:EGO94334.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E169C2
04302015_21_scaffold_304_2
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(339..1493)
DNA (1155bp) protein (385aa)
3-carboxy-cis,cis-muconate cycloisomerase; K01857 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
3-carboxy-cis,cis-muconate cycloisomerase {ECO:0000313|EMBL:ABQ31675.1}; EC=5.5.1.2 {ECO:0000313|EMBL:ABQ31675.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
3-carboxy-cis,cis-muconate cycloisomerase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G1E3_ACICJ
04302015_21_scaffold_304_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1493..2695)
DNA (1203bp) protein (401aa)
beta-ketoadipyl CoA thiolase (EC:2.3.1.16) rbh
acetyl-CoA acetyltransferase n=1 Tax=Roseomonas sp. B5 RepID=UPI0003050456 rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:GAN76915.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
04302015_21_scaffold_304_4
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2778..3311)
DNA (534bp) protein (178aa)
pcaG; protocatechuate 3,4-dioxygenase subunit alpha (EC:1.13.11.3); K00448 protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
Protocatechuate 3,4-dioxygenase alpha subunit {ECO:0000313|EMBL:KDM65658.1}; EC=1.13.11.3 {ECO:0000313|EMBL:KDM65658.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Protocatechuate 3,4-dioxygenase alpha subunit n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J076_ACIMA
04302015_21_scaffold_304_5
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3295..4017)
DNA (723bp) protein (241aa)
Protocatechuate 3,4-dioxygenase beta chain {ECO:0000313|EMBL:KDM65659.1}; EC=1.13.11.3 {ECO:0000313|EMBL:KDM65659.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
pcaH; protocatechuate 3,4-dioxygenase subunit beta (EC:1.13.11.3); K00449 protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
Protocatechuate 3,4-dioxygenase, beta subunit n=3 Tax=Acidiphilium RepID=A5FZL9_ACICJ
04302015_21_scaffold_304_6
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4014..5162)
DNA (1149bp) protein (383aa)
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:EGO94321.1}; EC=3.1.1.24 {ECO:0000313|EMBL:EGO94321.1};; EC=4.1.1.44 {ECO:0000313|EMBL:EGO94321.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
pcaL; 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase (EC:3.1.1.24 4.1.1.44); K14727 3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase [EC:3.1.1.24 4.1.1.44]
3-oxoadipate enol-lactonase n=1 Tax=Acidiphilium sp. PM RepID=F7S948_9PROT
04302015_21_scaffold_304_7
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5312..6703)
DNA (1392bp) protein (464aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
putative two-component sensor histidine kinase (EC:2.7.13.3); K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Putative two-component sensor histidine kinase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YNT8_9PROT rbh
04302015_21_scaffold_304_8
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6703..7953)
DNA (1251bp) protein (417aa)
Putative lipoprotein-like protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z0I9_9PROT rbh
Putative lipoprotein-like protein {ECO:0000313|EMBL:EKN00488.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
04302015_21_scaffold_304_9
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7974..8882
DNA (909bp) protein (303aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
uroporphyrin-III C/tetrapyrrole methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Uroporphyrin-III C/tetrapyrrole methyltransferase n=1 Tax=Acidiphilium sp. PM RepID=F7S5D8_9PROT
04302015_21_scaffold_304_10
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8882..10045
DNA (1164bp) protein (388aa)
Major facilitator superfamily protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z2W0_9PROT rbh
Major facilitator superfamily transporter {ECO:0000313|EMBL:GAN80133.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
arabinose efflux permease family protein rbh
04302015_21_scaffold_304_11
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10042..10521)
DNA (480bp) protein (160aa)
Transcriptional regulator, XRE family n=3 Tax=Acidiphilium RepID=A5FUG8_ACICJ
Transcriptional regulator XRE {ECO:0000313|EMBL:GAN79301.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
XRE family transcriptional regulator
04302015_21_scaffold_304_12
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10785..12275)
DNA (1491bp) protein (497aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
lnt; apolipoprotein N-acyltransferase (EC:2.3.1.-); K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Apolipoprotein N-acyltransferase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z104_9PROT rbh
04302015_21_scaffold_304_13
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12272..12955)
DNA (684bp) protein (228aa)
Enolase-phosphatase E1 {ECO:0000256|HAMAP-Rule:MF_01681}; EC=3.1.3.77 {ECO:0000256|HAMAP-Rule:MF_01681};; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase {ECO:0000256|HAMAP-Rule:MF_01681}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
2,3-diketo-5-methylthio-1-phosphopentane phosphatase; K09880 enolase-phosphatase E1 [EC:3.1.3.77]
haloacid dehalogenase n=1 Tax=Gluconacetobacter europaeus RepID=UPI000237F27C
04302015_21_scaffold_304_14
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12962..13117)
DNA (156bp) protein (52aa)
mtnD; acireductone dioxygenase (EC:1.13.11.53 1.13.11.54); K08967 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
Acireductone dioxygenase n=3 Tax=Acidiphilium RepID=MTND_ACICJ
Acireductone dioxygenase {ECO:0000256|HAMAP-Rule:MF_01682, ECO:0000256|SAAS:SAAS00009702}; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase {ECO:0000256|HAMAP-Rule:MF_01682, ECO:0000256|SAAS:SAAS00090345}; Acireductone dioxygenase (Fe(2+)-requiring) {ECO:0000256|HAMAP-Rule:MF_01682}; Acireductone dioxygenase (Ni(2+)-requiring) {ECO:0000256|HAMAP-Rule:MF_01682}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium s
Displaying 14 items

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