ggKbase home page

04302015_21_scaffold_323

Search features with annotation key words

Displaying 17 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_323_1
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..283)
DNA (282bp) protein (94aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7]
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Diaminopimelate epimerase n=2 Tax=Acidiphilium RepID=F0J424_ACIMA
04302015_21_scaffold_323_2
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(348..986)
DNA (639bp) protein (213aa)
Methionine biosynthesis protein MetW n=3 Tax=Acidiphilium RepID=A5FVM9_ACICJ
metW; methionine biosynthesis protein MetW
Methionine biosynthesis protein MetW {ECO:0000313|EMBL:ABQ29661.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_323_3
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(983..2125)
DNA (1143bp) protein (381aa)
metX; homoserine O-acetyltransferase (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31]
Homoserine O-acetyltransferase {ECO:0000255|HAMAP-Rule:MF_00296}; EC=2.3.1.31 {ECO:0000255|HAMAP-Rule:MF_00296};; Homoserine O-trans-acetylase {ECO:0000255|HAMAP-Rule:MF_00296}; Short=HTA {ECO:0000255|HAMAP-Rule:MF_00296};; Short=Homoserine transacetylase {ECO:0000255|HAMAP-Rule:MF_00296};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Homoserine O-acetyltransferase n=2 Tax=Acidiphilium RepID=METX_ACICJ
04302015_21_scaffold_323_4
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2222..3070
DNA (849bp) protein (283aa)
putative chorismate mutase (EC:5.4.99.5)
Putative chorismate mutase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z2R6_9PROT rbh
Putative chorismate mutase {ECO:0000313|EMBL:EKN01424.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
04302015_21_scaffold_323_5
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3067..4152
DNA (1086bp) protein (362aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
Histidinol-phosphate aminotransferase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z3D7_9PROT rbh
04302015_21_scaffold_323_6
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4145..5032
DNA (888bp) protein (296aa)
Protein TyrC {ECO:0000313|EMBL:KDM68693.1}; EC=1.3.1.12 {ECO:0000313|EMBL:KDM68693.1};; EC=1.3.1.43 {ECO:0000313|EMBL:KDM68693.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
prephenate dehydrogenase (EC:1.3.1.12); K00220 cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
Prephenate dehydrogenase n=1 Tax=Acidiphilium sp. PM RepID=F7S484_9PROT
04302015_21_scaffold_323_7
Dictyostelium discoideum, Dictyostelium, Dictyosteliida, Eukaryota

Not on your lists

comp(5249..7768)
DNA (2520bp) protein (840aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A8108
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU04118.1}; TaxID=44689 species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium.;" source="Dictyostelium discoideum (Slime mold).;"
04302015_21_scaffold_323_8
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8298..9572)
DNA (1275bp) protein (425aa)
Chaperone SurA {ECO:0000256|SAAS:SAAS00043023}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YLH6_9PROT rbh
04302015_21_scaffold_323_9
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9569..11797)
DNA (2229bp) protein (743aa)
Organic solvent tolerance protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YY51_9PROT rbh
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
organic solvent tolerance protein; K04744 LPS-assembly protein
04302015_21_scaffold_323_10
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11802..12917)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YXI6_9PROT rbh
Transporter YjgP/YjgQ {ECO:0000313|EMBL:GAN81304.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
YjgP/YjgQ family permease; K11720 lipopolysaccharide export system permease protein
04302015_21_scaffold_323_11
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12917..14029)
DNA (1113bp) protein (371aa)
YjgP/YjgQ family permease n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XSV6_9PROT rbh
YjgP/YjgQ family permease {ECO:0000313|EMBL:EKM99694.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein; K07091 lipopolysaccharide export system permease protein rbh
04302015_21_scaffold_323_12
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14085..15065)
DNA (981bp) protein (327aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZGJ2_9PROT rbh
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein rbh
04302015_21_scaffold_323_13
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15144..15530)
DNA (387bp) protein (129aa)
Ribosome-binding factor A n=2 Tax=Acidiphilium RepID=RBFA_ACICJ
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
04302015_21_scaffold_323_14
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15558..18266)
DNA (2709bp) protein (903aa)
Translation initiation factor IF-2 n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=IF2_GRABC
Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2
04302015_21_scaffold_323_15
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18313..19008)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YUY2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKM98632.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
04302015_21_scaffold_323_16
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18974..20503)
DNA (1530bp) protein (510aa)
Transcription elongation factor NusA n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YUA6_9PROT rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A
04302015_21_scaffold_323_17
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20515..20877)
DNA (363bp) protein (121aa)
Ribosome maturation factor RimP n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XPP9_9PROT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
hypothetical protein; K09748 ribosome maturation factor RimP
Displaying 17 items

View Taxonomy