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04302015_21_scaffold_175

Search features with annotation key words

Displaying 25 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_175_1
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists


1..1026
DNA (1026bp) protein (342aa)
Signal recognition particle protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A1B0_9ACTN
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphilum DSM 19497.;"
ffh; signal recognition particle protein
04302015_21_scaffold_175_2
marine actinobacterium MedAcidi-G2B, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


1124..1498
DNA (375bp) protein (125aa)
30S ribosomal protein S16 n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A0B0_9ACTN
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1550401 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2B.;"
rpsP; 30S ribosomal protein S16
04302015_21_scaffold_175_3
marine actinobacterium MedAcidi-G2B, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1495..1830
DNA (336bp) protein (112aa)
UPF0109 protein YM304_18740 n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A007_9ACTN
UPF0109 protein MB54_02110 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1550401 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2B.;"
hypothetical protein
04302015_21_scaffold_175_4
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1833..2300
DNA (468bp) protein (156aa)
Ribosome maturation factor RimM n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z5W7_9ACTN
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
rimM; ribosome maturation factor RimM
04302015_21_scaffold_175_5
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2297..3049
DNA (753bp) protein (251aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z005_9ACTN
04302015_21_scaffold_175_6
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


3086..3442
DNA (357bp) protein (119aa)
50S ribosomal protein L19 n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SE03_GEOOG
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
04302015_21_scaffold_175_7
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3446..3745
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BWW4_BEUC1
Uncharacterized protein {ECO:0000313|EMBL:KEP22864.1}; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
hypothetical protein
04302015_21_scaffold_175_8
unknown

Not on your lists

3749..4231
DNA (483bp) protein (161aa)

This feature has no annotations

04302015_21_scaffold_175_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4228..4629)
DNA (402bp) protein (134aa)
Pyridoxamine 5'-phosphate oxidase id=2116196 bin=GWD2_Deltaproteobacteria_55_8 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
04302015_21_scaffold_175_10
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

4654..5703
DNA (1050bp) protein (350aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
apurinic endonuclease Apn1 (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2]
Probable endonuclease 4 n=1 Tax=Patulibacter medicamentivorans RepID=H0E227_9ACTN
04302015_21_scaffold_175_11
Chroococcidiopsis thermalis, Chroococcidiopsis, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

5709..7097
DNA (1389bp) protein (463aa)
fumarase, class II (EC:4.2.1.2)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=251229 species="Bacteria; Cyanobacteria; Pleurocapsales; Chroococcidiopsis.;" source="Chroococcidiopsis thermalis PCC 7203.;"
fumarate hydratase n=1 Tax=cyanobacterium PCC 7702 RepID=UPI000365BEB3 rbh
04302015_21_scaffold_175_12

Not on your lists

comp(7102..7677)
DNA (576bp) protein (192aa)
Uncharacterized protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0ZQ73_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD50461.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_21_scaffold_175_13
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(7677..8582)
DNA (906bp) protein (302aa)
heat shock protein HtpX; K03799 heat shock protein HtpX [EC:3.4.24.-] rbh
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; Flags: Precursor;; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC; 103882 / ICP).;"
Protease HtpX homolog n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LZX0_ACIFD rbh
04302015_21_scaffold_175_14
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8582..9316)
DNA (735bp) protein (245aa)
phage-shock protein n=1 Tax=Kribbella catacumbae RepID=UPI0003710956
phage shock protein A, PspA; K03969 phage shock protein A
Phage shock protein A, PspA {ECO:0000313|EMBL:ADB31780.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
04302015_21_scaffold_175_15
Mycobacterium intracellulare, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9400..9903)
DNA (504bp) protein (168aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit PurE protein (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=487521 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Myc
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600) RepID=H8IP15_MYCIA
04302015_21_scaffold_175_16
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9903..11060)
DNA (1158bp) protein (386aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Mic
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
phosphoribosylaminoimidazole carboxylase n=1 Tax=Actinoplanes globisporus RepID=UPI00035EA2C3
04302015_21_scaffold_175_17
unknown

Not on your lists

11141..11509
DNA (369bp) protein (123aa)

This feature has no annotations

04302015_21_scaffold_175_18
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11513..12109)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RNC5_FRAAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ60964.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
04302015_21_scaffold_175_19
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(12126..12917)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A004_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN01864.1}; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
04302015_21_scaffold_175_20
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(13234..14505)
DNA (1272bp) protein (424aa)
MFS transporter n=1 Tax=Patulibacter americanus RepID=UPI0003B44B8A
Putative transmembrane efflux protein {ECO:0000313|EMBL:EHN12155.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
major facilitator superfamily protein
04302015_21_scaffold_175_21
unknown

Not on your lists

14693..15355
DNA (663bp) protein (221aa)

This feature has no annotations

04302015_21_scaffold_175_22
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15493..16167)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0LDK3_9ACTO
LigA protein {ECO:0000313|EMBL:EWM66839.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
hypothetical protein
04302015_21_scaffold_175_23
unknown

Not on your lists

comp(16416..17006)
DNA (591bp) protein (197aa)

This feature has no annotations

04302015_21_scaffold_175_24
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(17205..18395)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00036897B9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU53196.1}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC; 103882 / ICP).;"
04302015_21_scaffold_175_25
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(18406..18927)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003639F03
RNA polymerase sigma factor {ECO:0000313|EMBL:KJF17601.1}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
putative RNA polymerase ECF-subfamily sigma factor
Displaying 25 items

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