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04302015_21_scaffold_254

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_254_1
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(2..1138)
DNA (1137bp) protein (379aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
argH; argininosuccinate lyase (EC:4.3.2.1) rbh
Argininosuccinate lyase n=1 Tax=uncultured actinobacterium HF4000_04C13 RepID=E0XVB5_9ACTN rbh
04302015_21_scaffold_254_2

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comp(1141..2364)
DNA (1224bp) protein (408aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1256590 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_862.;"
argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] rbh
Argininosuccinate synthase n=1 Tax=uncultured bacterium A1Q1_fos_862 RepID=L7W1R6_9BACT
04302015_21_scaffold_254_3
uncultured actinobacterium HF0070_17F14, Actinobacteria, Actinobacteria, Bacteria

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comp(2361..2843)
DNA (483bp) protein (161aa)
Arginine repressor n=2 Tax=Bacteria RepID=E0XSC8_9ACTN
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=711000 species="Bacteria; Actinobacteria; environmental samples.;" source="uncultured actinobacterium HF0070_17F14.;"
argR; arginine repressor
04302015_21_scaffold_254_4
uncultured actinobacterium HF4000_04C13, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2840..3754)
DNA (915bp) protein (305aa)
Ornithine carbamoyltransferase {ECO:0000256|SAAS:SAAS00106174}; EC=2.1.3.3 {ECO:0000256|SAAS:SAAS00106174};; TaxID=711002 species="Bacteria; Actinobacteria; environmental samples.;" source="uncultured actinobacterium HF4000_04C13.;"
aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; K00611 ornithine carbamoyltransferase [EC:2.1.3.3]
Ornithine carbamoyltransferase n=1 Tax=uncultured actinobacterium HF4000_04C13 RepID=E0XVB8_9ACTN
04302015_21_scaffold_254_5
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3751..4536)
DNA (786bp) protein (262aa)
acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8]
Acetylglutamate kinase {ECO:0000255|HAMAP-Rule:MF_00082}; EC=2.7.2.8 {ECO:0000255|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000255|HAMAP-Rule:MF_00082}; Short=AGK {ECO:0000255|HAMAP-Rule:MF_00082};; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
Acetylglutamate kinase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=ARGB_SYMTH
04302015_21_scaffold_254_6
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

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comp(4533..5546)
DNA (1014bp) protein (338aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38) rbh
N-acetyl-gamma-glutamyl-phosphate reductase n=2 Tax=Bacteria RepID=E0XSC3_9ACTN rbh
04302015_21_scaffold_254_7
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

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5645..6496
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XC21_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV81415.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
04302015_21_scaffold_254_8
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(6484..7191)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A178_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN02507.1}; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
04302015_21_scaffold_254_9

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comp(7191..9659)
DNA (2469bp) protein (823aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1256590 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_862.;"
pheT; phenylalanyl-tRNA synthetase beta chain (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=uncultured bacterium A1Q1_fos_862 RepID=L7VYL1_9BACT rbh
04302015_21_scaffold_254_10
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(9656..10726)
DNA (1071bp) protein (357aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanine--tRNA ligase alpha subunit; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphilum DSM 19497.;"
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M0T2_ACIFD
04302015_21_scaffold_254_11
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10739..11350)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI00036784AB
rRNA methylase {ECO:0000313|EMBL:GAD33497.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
TrmH family RNA methyltransferase; K03437 RNA methyltransferase, TrmH family
04302015_21_scaffold_254_12

Not on your lists


comp(11555..11914)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=uncultured bacterium A1Q1_fos_862 RepID=L7VY02_9BACT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1256590 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_862.;"
rplT; 50S ribosomal protein L20
04302015_21_scaffold_254_13
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists


comp(11943..12137)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00035F575D
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
rpmI; 50S ribosomal protein L35
04302015_21_scaffold_254_14
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12139..12675)
DNA (537bp) protein (179aa)
Translation initiation factor IF-3 n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4YYV3_9ACTN
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3
04302015_21_scaffold_254_15
unknown

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12904..13209
DNA (306bp) protein (102aa)

This feature has no annotations

04302015_21_scaffold_254_16

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comp(13206..14552)
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00037729F7
Uncharacterized protein {ECO:0000313|EMBL:KGA19763.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
two-component system sensor kinase
04302015_21_scaffold_254_17

Not on your lists

comp(14549..14896)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=actinobacterium SCGC AAA044-N04 RepID=UPI00037064F6
Uncharacterized protein {ECO:0000313|EMBL:KGA19762.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
winged helix family two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Displaying 17 items

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