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04302015_21_scaffold_383

Search features with annotation key words

Displaying 15 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_383_1
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1127
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI00037A28C8 rbh
Putative fatty-acid--CoA ligase {ECO:0000313|EMBL:GAO39403.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
matB; Malonyl-CoA synthetase rbh
04302015_21_scaffold_383_2
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(1172..2002)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00035E24E1
transporter-associated region
Tax=RBG_16_Actinobacteria_68_21_curated
04302015_21_scaffold_383_3

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comp(1995..2426)
DNA (432bp) protein (144aa)
Response regulator receiver protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T1ATP1_9ZZZZ
Response regulator receiver protein {ECO:0000313|EMBL:EQD60767.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
response regulator receiver protein
04302015_21_scaffold_383_4
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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2532..2774
DNA (243bp) protein (81aa)
Transcriptional regulator WhiB n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4YWD0_9ACTN
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
WhiB family transcriptional regulator
04302015_21_scaffold_383_5
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(2760..3227)
DNA (468bp) protein (156aa)
Vitamin K epoxide reductase n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LWM8_ACIC1
vitamin K epoxide reductase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
04302015_21_scaffold_383_6

Not on your lists

comp(3224..4177)
DNA (954bp) protein (318aa)
Protein containing DUF929 (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BFS8_9ZZZZ
Protein containing DUF929 {ECO:0000313|EMBL:EQD53010.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_21_scaffold_383_7
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

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4263..5078
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002EEB8D4
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
04302015_21_scaffold_383_8
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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5116..5481
DNA (366bp) protein (122aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M2G5_ACIFD
iron-sulfur cluster assembly accessory protein; K13628 iron-sulfur cluster assembly protein
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:ACU53209.1}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC; 103882 / ICP).;"
04302015_21_scaffold_383_9
Prevotella marshii, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5481..5837
DNA (357bp) protein (119aa)
Putative endoribonuclease L-PSP n=1 Tax=Prevotella saccharolytica F0055 RepID=L1N099_9BACT
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:EFM02356.1}; TaxID=862515 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella marshii DSM 16973 = JCM 13450.;"
putative endoribonuclease L-PSP; K07567 TdcF protein
04302015_21_scaffold_383_10
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(5834..6526)
DNA (693bp) protein (231aa)
Putative two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M2G6_ACIFD
Transcriptional regulatory protein SrrA {ECO:0000313|EMBL:KJF18919.1}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
winged helix family two component transcriptional regulator
04302015_21_scaffold_383_11
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(6523..7812)
DNA (1290bp) protein (430aa)
Putative glutamine synthetase 2 {ECO:0000313|EMBL:KJF18918.1}; EC=6.3.1.2 {ECO:0000313|EMBL:KJF18918.1};; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
glnA; glutamine synthetase I (EC:6.3.1.2) rbh
Glutamine synthetase I n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A5S7_9ACTN rbh
04302015_21_scaffold_383_12
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7857..8960)
DNA (1104bp) protein (368aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
glnII; glutamine synthetase (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase n=1 Tax=Frankia sp. QA3 RepID=I8QVH1_9ACTO
04302015_21_scaffold_383_13

Not on your lists

9089..10852
DNA (1764bp) protein (588aa)
NAD+ synthetase; K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] id=24542944 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] rbh
Uncharacterized protein {ECO:0000313|EMBL:KGA17483.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
04302015_21_scaffold_383_14
unknown

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10849..11352
DNA (504bp) protein (168aa)

This feature has no annotations

04302015_21_scaffold_383_15
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11433..11834
DNA (402bp) protein (134aa)
RNA polymerase sigma factor n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z0H9_9ACTN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
putative RNA polymerase sigma factor
Displaying 15 items

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