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04302015_21_scaffold_464

Search features with annotation key words

Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_464_1

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comp(2..595)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=actinobacterium SCGC AAA023-J06 RepID=UPI00038033CA
Uncharacterized protein {ECO:0000313|EMBL:KGA18686.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
response regulator; K02483 two-component system, OmpR family, response regulator
04302015_21_scaffold_464_2
unknown

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737..1198
DNA (462bp) protein (154aa)

This feature has no annotations

04302015_21_scaffold_464_3
unknown

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comp(1195..1398)
DNA (204bp) protein (68aa)

This feature has no annotations

04302015_21_scaffold_464_4

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comp(1395..1925)
DNA (531bp) protein (177aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000313|EMBL:EQD59001.1}; EC=2.5.1.9 {ECO:0000313|EMBL:EQD59001.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase n=2 Tax=mine drainage metagenome RepID=T1AEE9_9ZZZZ
04302015_21_scaffold_464_5

Not on your lists

comp(1912..3132)
DNA (1221bp) protein (407aa)
GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
Riboflavin biosynthesis protein RibBA n=1 Tax=uncultured bacterium A1Q1_fos_862 RepID=L7VZM5_9BACT
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1256590 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_862.;"
04302015_21_scaffold_464_6
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(3132..4112)
DNA (981bp) protein (327aa)
ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26) rbh
Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase {ECO:0000313|EMBL:BAN01628.1}; EC=1.1.1.193 {ECO:0000313|EMBL:BAN01628.1};; EC=3.5.4.26 {ECO:0000313|EMBL:BAN01628.1};; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Riboflavin biosynthesis protein RibD n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZYC5_9ACTN rbh
04302015_21_scaffold_464_7
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4109..4795)
DNA (687bp) protein (229aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
Ribulose-phosphate 3-epimerase n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I517_DESAP
04302015_21_scaffold_464_8
uncultured actinobacterium HF4000_04C13, Actinobacteria, Actinobacteria, Bacteria

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comp(4805..5695)
DNA (891bp) protein (297aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=711002 species="Bacteria; Actinobacteria; environmental samples.;" source="uncultured actinobacterium HF4000_04C13.;"
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=uncultured actinobacterium HF4000_04C13 RepID=E0XVA6_9ACTN
04302015_21_scaffold_464_9
uncultured actinobacterium HF4000_04C13, Actinobacteria, Actinobacteria, Bacteria

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comp(5696..6202)
DNA (507bp) protein (169aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=711002 species="Bacteria; Actinobacteria; environmental samples.;" source="uncultured actinobacterium HF4000_04C13.;"
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase n=1 Tax=uncultured actinobacterium HF4000_04C13 RepID=E0XVA5_9ACTN
04302015_21_scaffold_464_10
uncultured actinobacterium HF4000_04C13, Actinobacteria, Actinobacteria, Bacteria

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comp(6212..7909)
DNA (1698bp) protein (566aa)
priA; putative primosomal protein n' (EC:3.6.1.-)
Primosomal protein n' (Replication factor y)-superfamily II helicase n=1 Tax=uncultured actinobacterium HF4000_04C13 RepID=E0XVA2_9ACTN rbh
Primosomal protein n' (Replication factor y)-superfamily II helicase {ECO:0000313|EMBL:ADI18343.1}; TaxID=711002 species="Bacteria; Actinobacteria; environmental samples.;" source="uncultured actinobacterium HF4000_04C13.;"
04302015_21_scaffold_464_11
actinobacterium acAcidi, Actinobacteria, Actinobacteria, Bacteria

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comp(7909..9105)
DNA (1197bp) protein (399aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1504320 species="Bacteria; Actinobacteria.;" source="actinobacterium acAcidi.;"
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6]
S-adenosylmethionine synthase n=1 Tax=uncultured actinobacterium RepID=D0U633_9ACTN
04302015_21_scaffold_464_12
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(9102..10655)
DNA (1554bp) protein (518aa)
coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (EC:4.1.1.36 6.3.2.5) rbh
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:BAN02365.1}; EC=4.1.1.36 {ECO:0000313|EMBL:BAN02365.1};; EC=6.3.2.5 {ECO:0000313|EMBL:BAN02365.1};; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5AM28_9ACTN rbh
04302015_21_scaffold_464_13
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(10670..11236)
DNA (567bp) protein (189aa)
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|SAAS:SAAS00036702}; EC=2.7.4.8 {ECO:0000256|SAAS:SAAS00036702};; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Guanylate kinase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A0J0_9ACTN
04302015_21_scaffold_464_14
Actinomyces sp. S6-Spd3, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(11226..11546)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Actinomyces timonensis RepID=UPI0002EB72B4
Uncharacterized protein {ECO:0000313|EMBL:KGE99399.1}; TaxID=1284680 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces sp. S6-Spd3.;"
hypothetical protein
04302015_21_scaffold_464_15
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(11574..12266)
DNA (693bp) protein (231aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1338436 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source="Sinomonas sp. MUSC 117.;"
Orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
orotidine 5''''-phosphate decarboxylase n=1 Tax=Yaniella halotolerans RepID=UPI0003B644AF
04302015_21_scaffold_464_16
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(12253..13167)
DNA (915bp) protein (305aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.98.1) rbh
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
hypothetical protein n=1 Tax=Candidatus Microthrix parvicella RepID=UPI0003644BA7 rbh
04302015_21_scaffold_464_17
actinobacterium acAcidi, Actinobacteria, Actinobacteria, Bacteria

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comp(13160..16453)
DNA (3294bp) protein (1098aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1504320 species="Bacteria; Actinobacteria.;" source="actinobacterium acAcidi.;"
carB; carbamoyl-phosphate synthase large chain (EC:6.3.5.5) rbh
hypothetical protein n=1 Tax=Candidatus Microthrix parvicella RepID=UPI0003743821 rbh
04302015_21_scaffold_464_18
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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comp(16453..17328)
DNA (876bp) protein (292aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5)
hypothetical protein n=1 Tax=Candidatus Microthrix parvicella RepID=UPI00037B893C
Displaying 18 items

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