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04302015_21_scaffold_984

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Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_984_1
Streptomyces rapamycinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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2..1150
DNA (1149bp) protein (383aa)
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase {ECO:0000256|HAMAP-Rule:MF_01659}; Short=SEPHCHC synthase {ECO:0000256|HAMAP-Rule:MF_01659};; EC=2.2.1.9 {ECO:0000256|HAMAP-Rule:MF_01659};; Menaquinone biosynthesis protein MenD {ECO:0000256|HAMAP-Rule:MF_01659}; TaxID=1343740 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rapamycinicus NRRL 5491.;"
menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (EC:2.2.1.9)
hypothetical protein n=1 Tax=Streptomyces rapamycinicus RepID=UPI0003831663
04302015_21_scaffold_984_2
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1147..1893
DNA (747bp) protein (249aa)
Cytochrome c biogenesis protein, transmembrane n=1 Tax=Nocardioides sp. CF8 RepID=R7Y2B7_9ACTO
Cytochrome c biogenesis protein, transmembrane {ECO:0000313|EMBL:EON25400.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
cytochrome c biogenesis protein, transmembrane region; K06196 cytochrome c-type biogenesis protein
04302015_21_scaffold_984_3
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

1918..3198
DNA (1281bp) protein (427aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02006}; EC=6.1.1.1 {ECO:0000255|HAMAP-Rule:MF_02006};; Tyrosyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02006}; Short=TyrRS {ECO:0000255|HAMAP-Rule:MF_02006};; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Tyrosine--tRNA ligase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=SYY_ROSCS
04302015_21_scaffold_984_4
unknown

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3210..3944
DNA (735bp) protein (245aa)

This feature has no annotations

04302015_21_scaffold_984_5
unknown

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3954..4166
DNA (213bp) protein (71aa)

This feature has no annotations

04302015_21_scaffold_984_6
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(4163..4903)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A0Q7_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN02342.1}; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
04302015_21_scaffold_984_7
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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4958..5608
DNA (651bp) protein (217aa)
NifU domain protein n=1 Tax=mine drainage metagenome RepID=T0YI77_9ZZZZ
Fe/S biogenesis protein NfuA {ECO:0000313|EMBL:KJF17002.1}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
nitrogen-fixing NifU domain-containing protein; K07400 Fe/S biogenesis protein NfuA
04302015_21_scaffold_984_8
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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5636..6823
DNA (1188bp) protein (396aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphilum DSM 19497.;"
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] rbh
Chorismate synthase n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M0X6_ACIFD rbh
04302015_21_scaffold_984_9

Not on your lists

6826..7248
DNA (423bp) protein (141aa)
Shikimate kinase {ECO:0000313|EMBL:EQD38848.1}; EC=2.7.1.71 {ECO:0000313|EMBL:EQD38848.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
3-dehydroquinate synthase (EC:2.7.1.71 4.2.3.4); K13829 shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
Shikimate kinase n=1 Tax=mine drainage metagenome RepID=T0Z0K7_9ZZZZ
04302015_21_scaffold_984_10
marine actinobacterium MedAcidi-G2B, Actinobacteria, Actinobacteria, Bacteria

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7245..8291
DNA (1047bp) protein (349aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1550401 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2B.;"
3-dehydroquinate synthase n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z705_9ACTN
3-dehydroquinate synthase; K16020 5-deoxy-5-amino-3-dehydroquinate synthase
04302015_21_scaffold_984_11
marine actinobacterium MedAcidi-G2B, Actinobacteria, Actinobacteria, Bacteria

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8288..8746
DNA (459bp) protein (153aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1550401 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2B.;"
3-dehydroquinate dehydratase, type II (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M0X4_ACIFD
04302015_21_scaffold_984_12
actinobacterium acAcidi, Actinobacteria, Actinobacteria, Bacteria

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8786..9349
DNA (564bp) protein (188aa)
Elongation factor P n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M0X1_ACIFD
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1504320 species="Bacteria; Actinobacteria.;" source="actinobacterium acAcidi.;"
translation elongation factor P; K02356 elongation factor P
04302015_21_scaffold_984_13

Not on your lists

9351..9749
DNA (399bp) protein (133aa)
Transcription antitermination protein NusB (Fragment) n=1 Tax=mine drainage metagenome RepID=T1A1R8_9ZZZZ
Transcription antitermination protein NusB {ECO:0000313|EMBL:EQD35775.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
NusB antitermination factor; K03625 N utilization substance protein B
04302015_21_scaffold_984_14
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

9766..11502
DNA (1737bp) protein (579aa)
Putative uncharacterized protein n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M0U8_ACIFD
AhpC/TSA family protein {ECO:0000313|EMBL:KJE76336.1}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphilum DSM 19497.;"
hypothetical protein
04302015_21_scaffold_984_15
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11499..11804)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI0003701637
Uncharacterized protein {ECO:0000313|EMBL:EWT07675.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
04302015_21_scaffold_984_16
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

11879..12565
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M0W7_ACIFD
Uncharacterized protein {ECO:0000313|EMBL:KJF16785.1}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
hypothetical protein
04302015_21_scaffold_984_17
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

12599..13567
DNA (969bp) protein (323aa)
cytochrome c oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] rbh
Cytochrome c oxidase subunit II n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M0W6_ACIFD rbh
Cytochrome c oxidase subunit II {ECO:0000313|EMBL:ACU54624.1}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC; 103882 / ICP).;"
04302015_21_scaffold_984_18
unknown

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13626..13829
DNA (204bp) protein (68aa)

This feature has no annotations

Displaying 18 items

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