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04302015_21_scaffold_126

Search features with annotation key words

Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_126_1

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1..393
DNA (393bp) protein (131aa)
16S rRNA methyltransferase n=1 Tax=Methylotenera mobilis RepID=UPI000381CC73
Uncharacterized protein {ECO:0000313|EMBL:KKL49249.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
16S rRNA m3U1498 methyltransferase
04302015_21_scaffold_126_2

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496..1833
DNA (1338bp) protein (446aa)
N-acetylglutamate synthase (EC:2.3.1.1) rbh
N-acetylglutamate synthase n=1 Tax=mine drainage metagenome RepID=T0ZXF6_9ZZZZ
N-acetylglutamate synthase {ECO:0000313|EMBL:EQD49307.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_21_scaffold_126_3
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1847..2122
DNA (276bp) protein (92aa)
iron transporter n=1 Tax=Thiomonas sp. FB-6 RepID=UPI00035DE5B9
Fe(II) trafficking protein YggX
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
04302015_21_scaffold_126_4

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comp(2129..2842)
DNA (714bp) protein (238aa)
Transcriptional regulator PhoU n=1 Tax=mine drainage metagenome RepID=T1BJG4_9ZZZZ rbh
Transcriptional regulator PhoU {ECO:0000313|EMBL:EQD68638.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phosphate uptake regulator PhoU; K02039 phosphate transport system protein
04302015_21_scaffold_126_5

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comp(2911..3576)
DNA (666bp) protein (222aa)
cbbI; ribose-5-phosphate isomerase A (EC:5.3.1.6)
Ribose-5-phosphate isomerase A n=1 Tax=mine drainage metagenome RepID=T1CL88_9ZZZZ rbh
Ribose-5-phosphate isomerase A {ECO:0000313|EMBL:EQD68639.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_21_scaffold_126_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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4525..6051
DNA (1527bp) protein (509aa)
threonine dehydratase, biosynthetic; K01754 threonine dehydratase [EC:4.3.1.19]
Threonine dehydratase, biosynthetic n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SD66_GALCS
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
04302015_21_scaffold_126_7
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6038..7411)
DNA (1374bp) protein (458aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde dehydrogenase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y684_NITMU
Tax=GWA2_Gallionellales_55_18_curated
04302015_21_scaffold_126_8
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7723..9069
DNA (1347bp) protein (449aa)
Metallophosphoesterase n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UB30_RALPJ
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ACD27879.1}; Flags: Precursor;; TaxID=402626 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12J).;"
04302015_21_scaffold_126_9
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9216..10682
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000370804D rbh
Multidrug resistance protein B rbh
Multidrug resistance protein B {ECO:0000313|EMBL:AEC20705.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
04302015_21_scaffold_126_10

Not on your lists

10747..11625
DNA (879bp) protein (293aa)
Lipoprotein n=1 Tax=mine drainage metagenome RepID=T1BKM9_9ZZZZ
Lipoprotein {ECO:0000313|EMBL:EQD70337.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_21_scaffold_126_11
unknown

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11683..11919
DNA (237bp) protein (79aa)

This feature has no annotations

04302015_21_scaffold_126_12
unknown

Not on your lists

11926..12372
DNA (447bp) protein (149aa)

This feature has no annotations

04302015_21_scaffold_126_trna_1
unknown

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comp(13170..13242)
DNA (73bp)
transferRNA
04302015_21_scaffold_126_13
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13285..14067)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Herbaspirillum sp. CF444 RepID=J2LE48_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL83438.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
short chain dehydrogenase
04302015_21_scaffold_126_14
Polynucleobacter necessarius, Polynucleobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14064..14972)
DNA (909bp) protein (303aa)
Putative nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AKD26316.1}; EC=1.6.99.3 {ECO:0000313|EMBL:AKD26316.1};; TaxID=576611 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter.;" source="Polynucleobacter necessarius subsp. asymbioticus.;"
NAD-dependent epimerase/dehydratase id=1698409 bin=GWA2_Polynucleobacter_45_21 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Polynucleobacter_45_21 organism_group=Betaproteobacteria
NAD-dependent epimerase/dehydratase
04302015_21_scaffold_126_15
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14982..15404)
DNA (423bp) protein (141aa)
Ferric uptake regulator family protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMB7_9PROT
ferric uptake regulator family protein
Ferric uptake regulator family protein {ECO:0000313|EMBL:BAN35929.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
04302015_21_scaffold_126_16
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15473..16408)
DNA (936bp) protein (312aa)
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2) rbh
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00037DFA4B rbh
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
04302015_21_scaffold_126_17
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16410..17063)
DNA (654bp) protein (218aa)
Oxidoreductase molybdopterin binding protein n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QJ74_METS6
oxidoreductase molybdopterin-binding protein; K07147
Oxidoreductase molybdopterin binding {ECO:0000313|EMBL:ACT49771.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
04302015_21_scaffold_126_18

Not on your lists

comp(17056..17526)
DNA (471bp) protein (157aa)
Peptidase A8, signal peptidase II {ECO:0000313|EMBL:EQD34514.1}; EC=3.4.23.36 {ECO:0000313|EMBL:EQD34514.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36]
Peptidase A8, signal peptidase II n=1 Tax=mine drainage metagenome RepID=T1A0A2_9ZZZZ
04302015_21_scaffold_126_19
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17519..20353)
DNA (2835bp) protein (945aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5) rbh
Isoleucine--tRNA ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAI9_9PROT rbh
04302015_21_scaffold_126_20
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20350..21282)
DNA (933bp) protein (311aa)
riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
Riboflavin biosynthesis protein RibF n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GJN7_NITSI
04302015_21_scaffold_126_21
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21427..22200)
DNA (774bp) protein (258aa)
Sulfite exporter TauE/SafE n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2J1U0_PSEUL
sulfite exporter TauE/SafE; K07090
Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
04302015_21_scaffold_126_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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22309..23244
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X3_NITMU
transcriptional regulator CysB-like protein; K13634 LysR family transcriptional regulator, cys regulon transcriptional activator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABB74448.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
04302015_21_scaffold_126_23

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comp(23411..24790)
DNA (1380bp) protein (460aa)
Integral membrane protein MviN n=1 Tax=mine drainage metagenome RepID=T0YZI1_9ZZZZ
Integral membrane protein MviN {ECO:0000313|EMBL:EQD37362.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
integral membrane protein MviN; K03980 virulence factor
Displaying 24 items

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