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04302015_21_scaffold_134

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_134_1
beta proteobacterium CB, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..953)
DNA (951bp) protein (317aa)
Two component LuxR family transcriptional regulator n=1 Tax=beta proteobacterium CB RepID=M1SFP2_9PROT
two component LuxR family transcriptional regulator
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:AGG33224.1}; TaxID=543913 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="beta proteobacterium CB.;"
04302015_21_scaffold_134_2
beta proteobacterium CB, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(958..1956)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=beta proteobacterium CB RepID=M1SME3_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG33223.1}; TaxID=543913 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="beta proteobacterium CB.;"
04302015_21_scaffold_134_3
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1961..5815)
DNA (3855bp) protein (1285aa)
ATP-binding cassette subfamily C n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3ADW4_9PROT rbh
lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
04302015_21_scaffold_134_4
beta proteobacterium CB, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5812..7356)
DNA (1545bp) protein (515aa)
RND efflux system outer membrane lipoprotein n=1 Tax=beta proteobacterium CB RepID=M1SUA3_9PROT rbh
RND efflux system outer membrane lipoprotein rbh
RND efflux system outer membrane lipoprotein {ECO:0000313|EMBL:AGG33221.1}; TaxID=543913 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="beta proteobacterium CB.;"
04302015_21_scaffold_134_5
beta proteobacterium CB, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8420..8665)
DNA (246bp) protein (82aa)
Transposase IS3/IS911 n=1 Tax=beta proteobacterium CB RepID=M1T5A2_9PROT
Transposase IS3/IS911
Transposase IS3/IS911 {ECO:0000313|EMBL:AGG34157.1}; TaxID=543913 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="beta proteobacterium CB.;"
04302015_21_scaffold_134_6
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8839..11556)
DNA (2718bp) protein (906aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI0003799D0A
GGDEF/EAL-domain containing protein
Putative GGDEF/EAL-domain containing protein {ECO:0000313|EMBL:CCE24701.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
04302015_21_scaffold_134_7
unknown

Not on your lists

12044..12328
DNA (285bp) protein (95aa)

This feature has no annotations

04302015_21_scaffold_134_8
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13171..13551
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Asaia sp. SF2.1 RepID=V8ABV4_9PROT
Calcium-binding mitochondrial carrier protein Aralar2 {ECO:0000313|EMBL:BAP88099.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
04302015_21_scaffold_134_trna_2
unknown

Not on your lists

comp(13643..13726)
DNA (84bp)
transferRNA
04302015_21_scaffold_134_9
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13810..16008
DNA (2199bp) protein (733aa)
ribonuclease R (EC:3.1.13.1) rbh
Ribonuclease R n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AHI1_9PROT rbh
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
04302015_21_scaffold_134_10
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16005..16751
DNA (747bp) protein (249aa)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; 23S rRNA Gm2251 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
rRNA methylase, putative, group 3; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3X7B2_OXAFO
04302015_21_scaffold_134_11
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16868..17251
DNA (384bp) protein (128aa)
30S ribosomal protein S6 n=1 Tax=Azoarcus toluclasticus RepID=UPI000362F7AE
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
04302015_21_scaffold_134_12
unknown

Not on your lists

17269..17553
DNA (285bp) protein (95aa)

This feature has no annotations

04302015_21_scaffold_134_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17555..17827
DNA (273bp) protein (91aa)
30S ribosomal protein S18 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLI7_9PROT
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
04302015_21_scaffold_134_14

Not on your lists


17838..18287
DNA (450bp) protein (150aa)
Ribosomal protein L9 n=1 Tax=mine drainage metagenome RepID=T1BXW4_9ZZZZ
Ribosomal protein L9 {ECO:0000313|EMBL:EQD73508.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L9P; K02939 large subunit ribosomal protein L9
04302015_21_scaffold_134_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18299..19681
DNA (1383bp) protein (461aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] rbh
Primary replicative DNA helicase {ECO:0000313|EMBL:ABB75242.1}; EC=3.6.1.- {ECO:0000313|EMBL:ABB75242.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Primary replicative DNA helicase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7M9_NITMU rbh
04302015_21_scaffold_134_16
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19687..21057
DNA (1371bp) protein (457aa)
DNA repair protein RadA n=1 Tax=Methylophilus methylotrophus RepID=UPI00036F4A19
sms; DNA repair protein RadA
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
04302015_21_scaffold_134_17
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21039..21788)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003723BD6
Short-chain dehydrogenase {ECO:0000313|EMBL:KIA81557.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
short-chain dehydrogenase/reductase SDR
04302015_21_scaffold_134_trna_1
unknown

Not on your lists

21827..21908
DNA (82bp)
transferRNA
04302015_21_scaffold_134_18
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22129..23067
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Burkholderia pseudomallei RepID=UPI0003755E86
Phage integrase family protein
Phage integrase family protein {ECO:0000313|EMBL:CBJ38360.1}; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CMR15.;"
Displaying 20 items

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