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04302015_21_scaffold_42

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Displaying items 1-30 of 62 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_42_1
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..182)
DNA (180bp) protein (60aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=392484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga thiooxydans.;"
Aspartyl-tRNA(Asn) amidotransferase subunit B @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC:6.3.5.6 6.3.5.7); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N3I8_9GAMM
04302015_21_scaffold_42_2
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(253..1704)
DNA (1452bp) protein (484aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] rbh
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E4B3_9GAMM rbh
04302015_21_scaffold_42_3
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1764..2051)
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
glutamyl-tRNA(Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWA1_NITHN
04302015_21_scaffold_42_4
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2186..3232
DNA (1047bp) protein (349aa)
Penicillin-binding protein 2 n=2 Tax=sulfur-oxidizing symbionts RepID=G2DE45_9GAMM rbh
Rod shape-determining protein MreB {ECO:0000313|EMBL:EGW54289.1}; TaxID=1049564 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
Rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins rbh
04302015_21_scaffold_42_5
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3317..4159
DNA (843bp) protein (281aa)
Cell shape-determining protein MreC n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BQ54_9GAMM
rod shape-determining protein MreC
Tax=BJP_IG2102_Gammaproteobacteria_62_140
04302015_21_scaffold_42_6
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4156..4644
DNA (489bp) protein (163aa)
Rod shape-determining protein MreD n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=A1WVS1_HALHL
rod shape-determining protein MreD; K03571 rod shape-determining protein MreD
Tax=BJP_IG2102_Gammaproteobacteria_62_140
04302015_21_scaffold_42_7
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4798..6654
DNA (1857bp) protein (619aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K05515 penicillin-binding protein 2 rbh
Penicillin-binding protein 2 n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FG53_9GAMM rbh
Penicillin-binding protein 2 {ECO:0000313|EMBL:EGW54286.1}; TaxID=1049564 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
04302015_21_scaffold_42_8
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6651..7787
DNA (1137bp) protein (379aa)
D-alanyl-D-alanine carboxypeptidase dacC n=2 Tax=sulfur-oxidizing symbionts RepID=G2DE40_9GAMM rbh
Rod shape-determining protein rodA {ECO:0000313|EMBL:EGV51110.1}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
rod shape-determining protein RodA; K05837 rod shape determining protein RodA rbh
04302015_21_scaffold_42_9
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7811..8845
DNA (1035bp) protein (345aa)
lytic murein transglycosylase B; K08305 membrane-bound lytic murein transglycosylase B [EC:3.2.1.-] rbh
Lytic murein transglycosylase B n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0ACA8_ALKEH rbh
Lytic murein transglycosylase B {ECO:0000313|EMBL:ABI55529.1}; Flags: Precursor;; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
04302015_21_scaffold_42_10
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8842..9741
DNA (900bp) protein (300aa)
Rare lipoprotein A n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G1E9_9GAMM
rare lipoprotein A; K03642 rare lipoprotein A
Tax=BJP_IG2102_Gammaproteobacteria_62_140
04302015_21_scaffold_42_11
Methylophaga aminisulfidivorans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9967..11127
DNA (1161bp) protein (387aa)
Beta-lactamase (EC:3.5.2.6); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] rbh
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5T2P6_9GAMM rbh
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EGL53264.1}; TaxID=1026882 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga aminisulfidivorans MP.;"
04302015_21_scaffold_42_12
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11176..12030
DNA (855bp) protein (285aa)
class IV aminotransferase; K00824 D-alanine transaminase [EC:2.6.1.21] rbh
cytochrome C550 n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003796564 rbh
Aminotransferase class IV {ECO:0000313|EMBL:ADE13760.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
04302015_21_scaffold_42_13
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12116..12385
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00035F3160
UPF0250 protein JT25_21320 {ECO:0000256|HAMAP-Rule:MF_00659}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
hypothetical protein; K09158 hypothetical protein
04302015_21_scaffold_42_14
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12393..13070
DNA (678bp) protein (226aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|SAAS:SAAS00218471}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|SAAS:SAAS00218470};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source=
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
Octanoyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=LIPB_THIDA
04302015_21_scaffold_42_15
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13049..13507)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2J423_9PSED
Thioesterase {ECO:0000313|EMBL:KFE57448.1}; TaxID=317 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae.;"
hypothetical protein
04302015_21_scaffold_42_16
Desulfurivibrio alkaliphilus, Desulfurivibrio, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13517..13705)
DNA (189bp) protein (63aa)
Putative uncharacterized protein n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z465_DESAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH86340.1}; TaxID=589865 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfurivibrio.;" source="Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2).;"
04302015_21_scaffold_42_17
unknown

Not on your lists

comp(13839..14360)
DNA (522bp) protein (174aa)

This feature has no annotations

04302015_21_scaffold_42_18
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(14390..14800)
DNA (411bp) protein (137aa)
Putative membrane protein n=1 Tax=Lyngbya aestuarii BL J RepID=U7QK20_9CYAN
Putative membrane protein {ECO:0000313|EMBL:ERT07415.1}; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
hypothetical protein
04302015_21_scaffold_42_19
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14943..15284)
DNA (342bp) protein (114aa)
Sulfurtransferase {ECO:0000256|PIRNR:PIRNR006223}; EC=2.8.1.- {ECO:0000256|PIRNR:PIRNR006223};; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
Sulfur relay protein, TusE/DsrC/DsvC family n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQQ6_9BURK
TusE/DsrC/DsvC family sulfur relay protein
04302015_21_scaffold_42_20
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15562..15855
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00035E5084
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA35050.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
04302015_21_scaffold_42_21
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16025..16984
DNA (960bp) protein (320aa)
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] rbh
Lipoyl synthase {ECO:0000255|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000255|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000255|HAMAP-Rule:MF_00206}; Short=LS {ECO:0000255|HAMAP-Rule:MF_00206};; Lipoate synthase {ECO:0000255|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000255|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000255|HAMAP-Rule:MF_00206}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio s
Lipoyl synthase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=LIPA_THISH rbh
04302015_21_scaffold_42_22
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(17072..18163)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMW4_9PROT rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
04302015_21_scaffold_42_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18160..19230)
DNA (1071bp) protein (357aa)
peptidase M14 n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037A9263 rbh
succinylglutamate desuccinylase/aspartoacylase rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_21_scaffold_42_24
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19236..20444)
DNA (1209bp) protein (403aa)
glutamate--cysteine ligase GCS2 n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036C5E75 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACL71657.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
04302015_21_scaffold_42_25
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20452..20643)
DNA (192bp) protein (64aa)
Glutamate--cysteine ligase n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FG42_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDI01568.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
glutamate--cysteine ligase GCS2
04302015_21_scaffold_42_26
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20647..21099)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI000369F778
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADC72794.1}; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
04302015_21_scaffold_42_27
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21203..21865)
DNA (663bp) protein (221aa)
Nucleotidyl transferase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BV07_NITHN
nucleotidyl transferase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
04302015_21_scaffold_42_28
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21938..22960)
DNA (1023bp) protein (341aa)
Aminoglycoside phosphotransferase n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FG17_9GAMM rbh
aminoglycoside phosphotransferase rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
04302015_21_scaffold_42_29
Methylophaga lonarensis, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23023..23649
DNA (627bp) protein (209aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1286106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga lonarensis MPL.;"
Repressor lexA (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88]
LexA repressor n=1 Tax=Methylophaga lonarensis MPL RepID=M7PPV6_9GAMM
04302015_21_scaffold_42_30
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23830..24969)
DNA (1140bp) protein (380aa)
Adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] rbh
Adenylate kinase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GMX3_THISH rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
Displaying items 1-30 of 62 in total

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