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04302015_24_scaffold_291

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_291_1
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1277
DNA (1275bp) protein (425aa)
Integrase n=3 Tax=Pseudomonas aeruginosa RepID=U5AKF3_PSEAI rbh
Integrase {ECO:0000313|EMBL:CDM23708.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
phage-related integrase rbh
04302015_24_scaffold_291_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1332..1973)
DNA (642bp) protein (214aa)
Transcriptional regulator, LysR family n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13VS5_BURXL rbh
Regulatory protein, LysR-family {ECO:0000313|EMBL:CDM23709.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
LysR family transcriptional regulator rbh
04302015_24_scaffold_291_3
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2419..3327)
DNA (909bp) protein (303aa)
Transcriptional regulator, LysR family n=2 Tax=Proteobacteria RepID=Q13VS7_BURXL rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDM23710.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
LysR family transcriptional regulator rbh
04302015_24_scaffold_291_4
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3397..3630
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:KDD61982.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
04302015_24_scaffold_291_5
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3870..4550)
DNA (681bp) protein (227aa)
Transcriptional regulator, TetR family n=3 Tax=Proteobacteria RepID=Q13VS9_BURXL rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CDM23711.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
TetR family transcriptional regulator rbh
04302015_24_scaffold_291_6
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4760..6295
DNA (1536bp) protein (512aa)
NodT family efflux transporter, outer membrane factor (OMF) lipoprotein n=1 Tax=Aeromonas hydrophila SSU RepID=K1JH94_AERHY rbh
Multidrug transporter {ECO:0000313|EMBL:KGM52067.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
MFS efflux system, outer membrane porin rbh
04302015_24_scaffold_291_7
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6292..7863
DNA (1572bp) protein (524aa)
Uncharacterized protein n=1 Tax=Aeromonas hydrophila SSU RepID=K1JAH4_AERHY rbh
Inner membrane component of tripartite multidrug resistance system {ECO:0000313|EMBL:CDM23713.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
major facilitator superfamily multidrug efflux transporter rbh
04302015_24_scaffold_291_8
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7871..8905
DNA (1035bp) protein (345aa)
MFS multidrug efflux pump, membrane fusion protein, EmrA subfamily n=2 Tax=Proteobacteria RepID=Q13VU8_BURXL rbh
Membrane fusion component of tripartite multidrug resistance system {ECO:0000313|EMBL:CDM23714.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
major facilitator superfamily multidrug efflux pump membrane fusion protein; K03543 multidrug resistance protein A rbh
04302015_24_scaffold_291_9
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8937..9239
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida RepID=Q706R2_PSEPU
Uncharacterized protein {ECO:0000313|EMBL:CDF84939.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
hypothetical protein
04302015_24_scaffold_291_10
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9657..9929
DNA (273bp) protein (91aa)
Lipid A deacylase n=2 Tax=Proteobacteria RepID=Q13VV0_BURXL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE31789.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
04302015_24_scaffold_291_11
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10332..11534
DNA (1203bp) protein (401aa)
Putative esterase of the alpha-beta hydrolase superfamily n=3 Tax=Proteobacteria RepID=Q13VV1_BURXL rbh
alpha-beta hydrolase family esterase; K07001 NTE family protein rbh
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:ABE31788.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
04302015_24_scaffold_291_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11592..13442)
DNA (1851bp) protein (617aa)
Integrating conjugative element relaxase n=3 Tax=Pseudomonas aeruginosa RepID=V8GP33_PSEAI rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component {ECO:0000313|EMBL:CDM23719.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_291_13
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13760..14386
DNA (627bp) protein (209aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=A1W5S8_ACISJ rbh
Integrase {ECO:0000313|EMBL:CDM23720.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_291_14
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14399..15031
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IBE5_BORPD rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23721.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_291_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15116..15481
DNA (366bp) protein (122aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=B7V517_PSEA8
Uncharacterized protein {ECO:0000313|EMBL:CDM23722.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_291_16
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15493..17013)
DNA (1521bp) protein (507aa)
STY4579 n=5 Tax=Proteobacteria RepID=B7V518_PSEA8 rbh
Putative membrane protein {ECO:0000313|EMBL:CDM23723.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_291_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17029..17400)
DNA (372bp) protein (124aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=B7V519_PSEA8
Uncharacterized protein {ECO:0000313|EMBL:CDM23724.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_291_18
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17397..18794)
DNA (1398bp) protein (466aa)
Conserved hpothetical protein n=4 Tax=Proteobacteria RepID=B7V520_PSEA8 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23725.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_291_19
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18804..19751)
DNA (948bp) protein (316aa)
Uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=B7V521_PSEA8
Uncharacterized protein {ECO:0000313|EMBL:CDM23726.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_291_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19748..20194)
DNA (447bp) protein (149aa)
Integrating conjugative element protein n=4 Tax=Pseudomonas aeruginosa RepID=U5AHN1_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDM23727.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_291_21
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20375..21136)
DNA (762bp) protein (254aa)
Uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=B7V524_PSEA8 rbh
Protein-disulfide isomerase {ECO:0000313|EMBL:CDM23728.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_291_22
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21150..24017)
DNA (2868bp) protein (956aa)
Uncharacterized protein n=1 Tax=Xanthomonas campestris pv. vesicatoria (strain 85-10) RepID=Q3BT15_XANC5 rbh
Type IV secretory pathway, VirB4 components {ECO:0000313|EMBL:CDM23729.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_291_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24017..24457)
DNA (441bp) protein (147aa)
Conjugal transfer protein n=2 Tax=Pseudomonas aeruginosa RepID=V4UZ92_PSEAI
Putative lipoprotein {ECO:0000313|EMBL:CDM23730.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_291_24
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24438..25856)
DNA (1419bp) protein (473aa)
Putative secreted protein n=1 Tax=Xanthomonas campestris pv. vesicatoria (strain 85-10) RepID=Q3BT13_XANC5 rbh
Putative secreted protein {ECO:0000313|EMBL:CDM23731.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_291_25
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25846..26763)
DNA (918bp) protein (306aa)
Integrating conjugative element protein n=4 Tax=Proteobacteria RepID=T5KXR6_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23732.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_291_26
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26760..27452)
DNA (693bp) protein (231aa)
Integrating conjugative element protein n=1 Tax=Pseudomonas aeruginosa CF77 RepID=U8BGQ3_PSEAI rbh
Possible exported protein {ECO:0000313|EMBL:CDM23733.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_291_27
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27449..27859)
DNA (411bp) protein (137aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=B9MG50_ACIET
hypothetical protein
TIGR03750 family conjugative transfer region protein {ECO:0000313|EMBL:EZP05428.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
04302015_24_scaffold_291_28
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27872..28219)
DNA (348bp) protein (116aa)
Integrating conjugative element membrane protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HSS4_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDM23734.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
Displaying 28 items

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