ggKbase home page

04302015_24_scaffold_400

Search features with annotation key words

Displaying items 1-30 of 41 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_400_1
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..575
DNA (573bp) protein (191aa)
Integrating conjugative element protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HP82_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23776.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
FIG141694: hypothetical protein in PFGI-1-like cluster rbh
04302015_24_scaffold_400_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

572..1099
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HPC7_PSEAI rbh
Integrase regulator R {ECO:0000313|EMBL:CDM23775.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Integrase regulator R rbh
04302015_24_scaffold_400_3
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1173..1625
DNA (453bp) protein (151aa)
Single-stranded DNA-binding protein n=1 Tax=Pseudomonas aeruginosa WC55 RepID=T5L8N9_PSEAI rbh
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein rbh
04302015_24_scaffold_400_4
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1899..3911
DNA (2013bp) protein (671aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
topB2; DNA topoisomerase III (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2] rbh
DNA topoisomerase n=1 Tax=Pseudomonas aeruginosa WC55 RepID=T5KYD4_PSEAI rbh
04302015_24_scaffold_400_5
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4447..6063
DNA (1617bp) protein (539aa)
DNA methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
Cytosine-specific methyltransferase n=1 Tax=Xylella fastidiosa (strain 9a5c) RepID=Q9PCK4_XYLFA rbh
DNA methyltransferase {ECO:0000313|EMBL:AAF84583.1}; TaxID=160492 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa (strain 9a5c).;"
04302015_24_scaffold_400_6
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6306..6863
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Xanthomonas campestris pv. vesicatoria (strain 85-10) RepID=Q3BSX8_XANC5 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23769.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_400_7
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7194..7406
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HPC2_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDM23768.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_400_8
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7428..7820
DNA (393bp) protein (131aa)
Uncharacterized protein n=5 Tax=Proteobacteria RepID=Q3BSY0_XANC5
Uncharacterized protein {ECO:0000313|EMBL:CDM23767.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_400_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8032..8769
DNA (738bp) protein (246aa)
ABC transporter substrate-binding protein n=3 Tax=Pseudomonas aeruginosa RepID=U5ALZ1_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23766.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
FIG00902157: hypothetical protein rbh
04302015_24_scaffold_400_10
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8864..9142
DNA (279bp) protein (93aa)
Uridylate kinase n=4 Tax=Pseudomonas aeruginosa RepID=U5AN12_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDM23765.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_400_11
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9177..9638)
DNA (462bp) protein (154aa)
Thioesterase superfamily {ECO:0000313|EMBL:CDM23764.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
thioesterase superfamily protein id=12551695 bin=BDI species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
thioesterase superfamily protein
04302015_24_scaffold_400_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9668..10339)
DNA (672bp) protein (224aa)
UPI0003CF3A6D related cluster n=1 Tax=unknown RepID=UPI0003CF3A6D rbh
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CDM23763.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
04302015_24_scaffold_400_13
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10444..10797
DNA (354bp) protein (118aa)
Putative ACR protein {ECO:0000313|EMBL:CDM23762.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
DsrE family protein; K06039 uncharacterized protein involved in oxidation of intracellular sulfur id=12551698 bin=BDI species=Stenotrophomonas maltophilia genus=Stenotrophomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
DsrE family protein; K06039 uncharacterized protein involved in oxidation of intracellular sulfur
04302015_24_scaffold_400_14
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10797..11948
DNA (1152bp) protein (384aa)
Cysteine desulfurase {ECO:0000313|EMBL:CDM23761.1}; EC=2.8.1.7 {ECO:0000313|EMBL:CDM23761.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
iscS-2; cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7] id=12551699 bin=BDI species=Dyella japonica genus=Dyella taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
iscS-2; cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7] rbh
04302015_24_scaffold_400_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11974..13170
DNA (1197bp) protein (399aa)
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDM23760.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
MFS permease id=12551700 bin=BDI species=Stenotrophomonas sp. SKA14 genus=Stenotrophomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
MFS permease
04302015_24_scaffold_400_16
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13167..13697
DNA (531bp) protein (177aa)
YbaK/prolyl-tRNA synthetase associated region n=1 Tax=uncultured bacterium RepID=K2G2Z7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDM23759.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
YbaK/prolyl-tRNA synthetase associated domain-containing protein
04302015_24_scaffold_400_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13723..14343
DNA (621bp) protein (207aa)
SAM-dependent methyltransferases {ECO:0000313|EMBL:CDM23758.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein id=12550228 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
04302015_24_scaffold_400_18
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14616..15419
DNA (804bp) protein (268aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=R4XJT6_ALCXX rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23757.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
FIG076676: Hypothetical protein rbh
04302015_24_scaffold_400_19
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15498..15851
DNA (354bp) protein (118aa)
Uncharacterized protein n=4 Tax=Pseudomonas aeruginosa RepID=U5AS27_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDM23756.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_400_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16000..16842
DNA (843bp) protein (281aa)
Phage-related protein n=3 Tax=Xylella fastidiosa RepID=Q9PCL5_XYLFA rbh
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase {ECO:0000313|EMBL:CDM23755.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_400_21
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16848..17357
DNA (510bp) protein (170aa)
Uncharacterized protein n=3 Tax=Xylella fastidiosa RepID=Q9PCL6_XYLFA rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23754.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein rbh
04302015_24_scaffold_400_22
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17622..18539
DNA (918bp) protein (306aa)
FIG049434: Periplasmic protein TonB, links inner and outer membranes n=2 Tax=Proteobacteria RepID=R4XNV9_ALCXX rbh
Periplasmic protein TonB, links inner and outer membranes {ECO:0000313|EMBL:CDM23753.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
FIG049434: Periplasmic protein TonB, links inner and outer membranes rbh
04302015_24_scaffold_400_23
Xanthomonas euvesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18597..19286
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Xanthomonas campestris pv. vesicatoria (strain 85-10) RepID=Q3BSY8_XANC5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAJ24071.1}; TaxID=316273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. vesicatoria (strain 85-10).;"
04302015_24_scaffold_400_24
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19381..19722
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HSL5_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDM23751.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_400_25
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19826..20233
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HZ72_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDM23750.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
FIG046709: Hypothetical protein
04302015_24_scaffold_400_26
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20250..20510
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=A1W5I9_ACISJ
Uncharacterized protein {ECO:0000313|EMBL:CDM23749.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
04302015_24_scaffold_400_27
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20587..21237
DNA (651bp) protein (217aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=R4XNV5_ALCXX rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23748.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
FIG026997: Hypothetical protein rbh
04302015_24_scaffold_400_28
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21302..22411
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HSU3_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM23747.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
FIG023873: Plasmid related protein rbh
04302015_24_scaffold_400_29
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22463..22783
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HSL0_PSEAI
Putative N-acetyltransferase YedL {ECO:0000313|EMBL:KDD63712.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
FIG00954465: hypothetical protein
04302015_24_scaffold_400_30
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22872..23177
DNA (306bp) protein (102aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=R4XJS5_ALCXX
FIG00957490: hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM23745.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Displaying items 1-30 of 41 in total

View Taxonomy