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04302015_24_scaffold_31

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Displaying items 1-30 of 166 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_31_1
unknown

Not on your lists

comp(1..108)
DNA (108bp) protein (36aa)

This feature has no annotations

04302015_24_scaffold_31_2
Pseudomonas sp. CFII64, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

162..1361
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030BC43B rbh
Phage integrase family protein {ECO:0000313|EMBL:EPJ75786.1}; TaxID=911242 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CFII64.;"
integrase family protein
04302015_24_scaffold_31_3
Teredinibacter turnerae, Teredinibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1422..2003
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI0003632ABF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR14426.1}; TaxID=377629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadales genera incertae sedis; Teredinibacter.;" source="Teredinibacter turnerae (strain ATCC 39867 / T7901).;"
04302015_24_scaffold_31_4
Neisseria shayeganii, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2000..2851
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI0002FF98FC rbh
Protein of hypothetical function DUF1814 {ECO:0000313|EMBL:EGY52826.1}; TaxID=1032488 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria shayeganii 871.;"
hypothetical protein rbh
04302015_24_scaffold_31_5
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2984..5059
DNA (2076bp) protein (692aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y3C6_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB34454.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
04302015_24_scaffold_31_6
unknown

Not on your lists

5023..5166
DNA (144bp) protein (48aa)

This feature has no annotations

04302015_24_scaffold_31_7
unknown

Not on your lists

5374..5637
DNA (264bp) protein (88aa)

This feature has no annotations

04302015_24_scaffold_31_8
unknown

Not on your lists

comp(5847..6023)
DNA (177bp) protein (59aa)

This feature has no annotations

04302015_24_scaffold_31_9

Not on your lists

comp(6028..6240)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1DE14_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD80275.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_24_scaffold_31_10
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6342..9026)
DNA (2685bp) protein (895aa)
S-layer protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=SLAP_CAUCR rbh
rsaA; S-layer protein rsaA; K12544 S-layer protein rbh
S-layer protein; Paracrystalline surface layer protein; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
04302015_24_scaffold_31_11
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9286..10446
DNA (1161bp) protein (387aa)
Phage integrase family protein n=1 Tax=Pseudomonas sp. CFII64 RepID=S6GVC9_9PSED
Mobile element protein {ECO:0000313|EMBL:CDM26090.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
integrase family protein
04302015_24_scaffold_31_12
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10478..11461)
DNA (984bp) protein (328aa)
Site-specific tyrosine recombinase XerC n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YL52_9PROT rbh
Site-specific tyrosine recombinase XerC {ECO:0000313|EMBL:ESS15578.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
Integrase family protein
04302015_24_scaffold_31_13
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11556..13007)
DNA (1452bp) protein (484aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
pntB; NAD(P) transhydrogenase, beta subunit PntB (EC:1.6.1.2); K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2]
NAD synthetase n=1 Tax=Brachymonas chironomi RepID=UPI000362061E rbh
04302015_24_scaffold_31_14
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13004..13327)
DNA (324bp) protein (108aa)
NAD(P) transhydrogenase subunit alpha part 2; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036BB434
NAD(P) transhydrogenase, subunit alpha part 2 {ECO:0000313|EMBL:ACB32701.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
04302015_24_scaffold_31_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13341..14489)
DNA (1149bp) protein (383aa)
pntA; NAD(P) transhydrogenase, subunit alpha PntA (EC:1.6.1.2) rbh
NAD(P) transhydrogenase subunit alpha n=1 Tax=Variovorax sp. CF313 RepID=J2L3H8_9BURK rbh
NAD/NADP transhydrogenase alpha subunit {ECO:0000313|EMBL:EJL79798.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
04302015_24_scaffold_31_16
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14558..15439)
DNA (882bp) protein (294aa)
extracellular solute-binding protein id=5080042 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
extracellular solute-binding protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
04302015_24_scaffold_31_17
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15450..15941)
DNA (492bp) protein (164aa)
Cytochrome c-type protein id=1262601 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
cytochrome c-type protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
04302015_24_scaffold_31_18
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16155..18182
DNA (2028bp) protein (676aa)
Sigma-54 factor interaction domain-containing protein id=1262600 bin=GWE1_Burkholderiales_65_30 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Fis family GAF modulated sigma54 specific transcriptional regulator rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
04302015_24_scaffold_31_19
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18179..18556)
DNA (378bp) protein (126aa)
acetaldehyde dehydrogenase n=1 Tax=Acidovorax radicis RepID=UPI0002375FEC
hypothetical protein; K09959 hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
04302015_24_scaffold_31_20
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18579..18956)
DNA (378bp) protein (126aa)
acetaldehyde dehydrogenase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0003761A57
hypothetical protein; K09959 hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
04302015_24_scaffold_31_21
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19029..20549)
DNA (1521bp) protein (507aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:CBA31084.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CBA31084.1};; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
aldehyde dehydrogenase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00030C00AA rbh
similar to aldehyde dehydrogenase 2b
04302015_24_scaffold_31_22
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20710..21528)
DNA (819bp) protein (273aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VU24_POLNA
Sel1 domain-containing protein; K07126
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:ABM39152.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_24_scaffold_31_23
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21528..21866)
DNA (339bp) protein (113aa)
Cytochrome c, class I id=1262583 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
class I cytochrome c
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
04302015_24_scaffold_31_24
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21954..23693)
DNA (1740bp) protein (580aa)
Quinoprotein ethanol dehydrogenase {ECO:0000313|EMBL:EWS64861.1}; EC=1.1.2.8 {ECO:0000313|EMBL:EWS64861.1};; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
Pyrrolo-quinoline quinone; K00114 alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] rbh
Quinoprotein ethanol dehydrogenase, putative id=1262582 bin=GWE1_Burkholderiales_65_30 species=Methylibium petroleiphilum genus=Methylibium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
04302015_24_scaffold_31_25
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23967..24968)
DNA (1002bp) protein (334aa)
ApbE family lipoprotein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUC9_POLNA rbh
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein rbh
ApbE family lipoprotein {ECO:0000313|EMBL:ABM39257.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_24_scaffold_31_26
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24965..27100)
DNA (2136bp) protein (712aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003769E0E rbh
regulatory protein rbh
Regulatory protein, putative {ECO:0000313|EMBL:ABM39256.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_24_scaffold_31_27
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27252..29384
DNA (2133bp) protein (711aa)
Outer membrane receptor, TonB dependent id=1262573 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
04302015_24_scaffold_31_28
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29420..30367
DNA (948bp) protein (316aa)
Surface antigen n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VZG6_9BURK
YVTN beta-propeller repeat-containing protein
Tax=GWA2_Rhodocyclales_65_20_curated
04302015_24_scaffold_31_29
uncultured beta proteobacterium HF0130_04F21, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30381..30944
DNA (564bp) protein (188aa)
Cytochrome b561 n=1 Tax=uncultured beta proteobacterium HF0130_04F21 RepID=E0XSU7_9PROT
Cytochrome b561 {ECO:0000313|EMBL:ADI17465.1}; TaxID=710819 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; environmental samples.;" source="uncultured beta proteobacterium HF0130_04F21.;"
cytochrome b561; K12262 cytochrome b561
04302015_24_scaffold_31_30
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30941..31825
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000375D837
Two-component sensor histidine kinase-like protein {ECO:0000313|EMBL:EZP38916.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
integral membrane sensor signal transduction histidine kinase
Displaying items 1-30 of 166 in total

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