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04302015_24_scaffold_139

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Displaying items 1-30 of 94 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_139_1
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(150..3203)
DNA (3054bp) protein (1018aa)
L-proline dehydrogenase {ECO:0000313|EMBL:ABE42370.1}; EC=1.5.99.8 {ECO:0000313|EMBL:ABE42370.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12 1.5.99.8); K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12] rbh
L-proline dehydrogenase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GH2_POLSJ rbh
04302015_24_scaffold_139_2
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3301..3780
DNA (480bp) protein (160aa)
Transcriptional regulator, AsnC family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GH9_POLSJ
AsnC family transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABE42363.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_139_3
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3959..5098
DNA (1140bp) protein (380aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Polaromonas sp. CF318 RepID=J2TP15_9BURK rbh
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL80482.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
putative LEU/ILE/VAL-binding signal peptide protein
04302015_24_scaffold_139_4
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5142..5714
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J2L5H8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80483.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
04302015_24_scaffold_139_5
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5848..6564)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GI1_POLSJ rbh
hypothetical protein; K06997 rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE42361.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_139_6
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6605..7648
DNA (1044bp) protein (348aa)
Pilus retraction ATPase PilT n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VIX4_POLNA rbh
twitching motility protein; K02669 twitching motility protein PilT rbh
Pilus retraction ATPase PilT {ECO:0000313|EMBL:ABM35602.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_24_scaffold_139_7
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7799..8935
DNA (1137bp) protein (379aa)
Candidate type 4 fimbrial assembly protein pilU, putative traffic ATPase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVH4_RAMTT rbh
pilU; type 4 fimbrial assembly protein pilU traffic ATPase; K02670 twitching motility protein PilU rbh
Candidate type 4 fimbrial assembly protein pilU, putative traffic ATPase {ECO:0000313|EMBL:AEG91550.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
04302015_24_scaffold_139_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9081..9995
DNA (915bp) protein (305aa)
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYU6_9BURK
3-hydroxyisobutyrate dehydrogenase
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:AFU44169.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
04302015_24_scaffold_139_9
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10083..10766)
DNA (684bp) protein (228aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Polaromonas sp. CF318 RepID=J2KXD8_9BURK
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:EJL84710.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
transport protein
04302015_24_scaffold_139_10
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10767..11363)
DNA (597bp) protein (199aa)
phosphoheptose isomerase (EC:5.3.1.-); K03271 D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00067}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Phosphoheptose isomerase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GI6_POLSJ
04302015_24_scaffold_139_11
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11526..11981)
DNA (456bp) protein (152aa)
UPF0102 protein Pnap_0271 n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=Y271_POLNA
hypothetical protein; K07460 putative endonuclease
UPF0102 protein Pnap_0271 {ECO:0000255|HAMAP-Rule:MF_00048}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_24_scaffold_139_12
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12032..12871
DNA (840bp) protein (280aa)
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GI8_POLSJ
04302015_24_scaffold_139_13
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12894..13385)
DNA (492bp) protein (164aa)
Putative lipoprotein transmembrane n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VIW5_POLNA
Putative lipoprotein transmembrane {ECO:0000313|EMBL:CDS52263.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
putative lipoprotein transmembrane
04302015_24_scaffold_139_14
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13495..14097
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX78_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KDB50636.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
hypothetical protein
04302015_24_scaffold_139_15
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14094..15140)
DNA (1047bp) protein (349aa)
Exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Polaromonas sp. CF318 RepID=J3D312_9BURK rbh
Tax=GWA2_Curvibacter_64_110_curated
04302015_24_scaffold_139_16
unknown

Not on your lists

comp(15366..15677)
DNA (312bp) protein (104aa)

This feature has no annotations

04302015_24_scaffold_139_17
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15681..17081)
DNA (1401bp) protein (467aa)
Amidase {ECO:0000313|EMBL:KDR40455.1}; Aspartyl-tRNA(Asn) amidotransferase subunit A @ Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000313|EMBL:CDY77007.1}; EC=6.3.5.6 {ECO:0000313|EMBL:CDY77007.1};; EC=6.3.5.7 {ECO:0000313|EMBL:CDY77007.1};; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
amidase (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] rbh
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003676F57 rbh
04302015_24_scaffold_139_18
unknown

Not on your lists

comp(17078..17287)
DNA (210bp) protein (70aa)

This feature has no annotations

04302015_24_scaffold_139_19
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

17547..18191
DNA (645bp) protein (215aa)
Transcriptional regulator, MerR family n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W4Z0_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
04302015_24_scaffold_139_20
Serratia sp. M24T3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18265..19116
DNA (852bp) protein (284aa)
hydratase n=1 Tax=gamma proteobacterium WG36 RepID=UPI000364D6B0 rbh
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:EIC82382.1}; TaxID=932213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. M24T3.;"
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase rbh
04302015_24_scaffold_139_21
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19166..20326
DNA (1161bp) protein (387aa)
amino acid ABC transporter n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000363EB1B rbh
Urea ABC transporter, urea binding protein {ECO:0000313|EMBL:CDY77012.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
signal peptide; K01999 branched-chain amino acid transport system substrate-binding protein rbh
04302015_24_scaffold_139_22
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20408..21241
DNA (834bp) protein (278aa)
Inner-membrane translocator n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A865_STAND rbh
ABC transporter amide-urea permease {ECO:0000313|EMBL:GAN77137.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
04302015_24_scaffold_139_23
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21234..23078
DNA (1845bp) protein (615aa)
ABC transporter related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A864_STAND rbh
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein rbh
ABC transporter related protein {ECO:0000313|EMBL:ADH90522.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
04302015_24_scaffold_139_24
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23075..23782
DNA (708bp) protein (236aa)
ABC transporter related n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M496_METRJ
ABC transporter branched-chain amino acid permease {ECO:0000313|EMBL:GAN77139.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
04302015_24_scaffold_139_25
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23787..24509
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M497_METRJ
Uncharacterized protein {ECO:0000313|EMBL:GAN51641.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
hypothetical protein
04302015_24_scaffold_139_trna_1
unknown

Not on your lists

comp(24926..24998)
DNA (73bp)
transferRNA
04302015_24_scaffold_139_26
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25204..26073
DNA (870bp) protein (290aa)
Cytochrome c, class I n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GP1_POLSJ rbh
class I cytochrome c rbh
Cytochrome c, class I {ECO:0000313|EMBL:ABE42301.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_139_27
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26181..26732)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GP2_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE42300.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_139_28
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26738..27748)
DNA (1011bp) protein (337aa)
Putative hydrolase of the alpha/beta-hydrolase n=1 Tax=Polaromonas sp. CF318 RepID=J3D3C0_9BURK
Putative hydrolase of the alpha/beta-hydrolase {ECO:0000313|EMBL:EJL83696.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
alpha/beta hydrolase; K07019
04302015_24_scaffold_139_29
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27762..28208)
DNA (447bp) protein (149aa)
Ketosteroid isomerase-like enzyme n=1 Tax=Polaromonas sp. CF318 RepID=J2TY06_9BURK
Ketosteroid isomerase-like enzyme {ECO:0000313|EMBL:EJL83697.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
Displaying items 1-30 of 94 in total

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