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04302015_24_scaffold_2255

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_2255_1
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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209..1270
DNA (1062bp) protein (354aa)
murein-DD-endopeptidase; K07262 D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
Murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B46_POLSJ
Murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 {ECO:0000313|EMBL:ABE44246.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_2255_2
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1460..2239)
DNA (780bp) protein (260aa)
Transcriptional regulator, IclR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B45_POLSJ
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ABE44247.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_2255_3
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2301..3089)
DNA (789bp) protein (263aa)
arginyl-tRNA-protein transferase (EC:2.3.2.8); K00685 arginine-tRNA-protein transferase [EC:2.3.2.8] rbh
Putative arginyl-tRNA--protein transferase {ECO:0000255|HAMAP-Rule:MF_00689}; Short=Arginyltransferase {ECO:0000255|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000255|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000255|HAMAP-Rule:MF_00689};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Putative arginyl-tRNA--protein transferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=ATE_POLSJ rbh
04302015_24_scaffold_2255_4
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3086..3853)
DNA (768bp) protein (256aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6); K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000255|HAMAP-Rule:MF_00688}; EC=2.3.2.6 {ECO:0000255|HAMAP-Rule:MF_00688};; L/F-transferase {ECO:0000255|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000255|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000255|HAMAP-Rule:MF_00688}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=LFTR_POLSJ
04302015_24_scaffold_2255_trna_1
unknown

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4096..4168
DNA (73bp)
transferRNA
04302015_24_scaffold_2255_5
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4371..5576
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000371AA34 rbh
glucose/sorbosone dehydrogenase-like protein rbh
Glucose/sorbosone dehydrogenases-like protein {ECO:0000313|EMBL:AEG94515.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
04302015_24_scaffold_2255_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5563..6162
DNA (600bp) protein (200aa)
Cytochrome c4-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZF7_RAMTT
cytochrome c4
Cytochrome c4-like protein {ECO:0000313|EMBL:AEG94514.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
04302015_24_scaffold_2255_7
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6352..7236
DNA (885bp) protein (295aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7); K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:ABE44254.1}; EC=2.7.4.7 {ECO:0000313|EMBL:ABE44254.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Phosphomethylpyrimidine kinase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B38_POLSJ
04302015_24_scaffold_2255_8
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7181..7510)
DNA (330bp) protein (110aa)
Permease for cytosine/purines, uracil, thiamine, allantoin n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ13_POLNA
cytosine/purines uracil thiamine allantoin permease
Permease for cytosine/purines, uracil, thiamine, allantoin {ECO:0000313|EMBL:ABM37741.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_24_scaffold_2255_9
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7624..8202)
DNA (579bp) protein (193aa)
Purine-cytosine permease-like transporter n=1 Tax=Polaromonas sp. CF318 RepID=J3D2A4_9BURK
Purine-cytosine permease-like transporter {ECO:0000313|EMBL:EJL83061.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
cytosine/purines uracil thiamine allantoin permease
04302015_24_scaffold_2255_10
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8396..9496)
DNA (1101bp) protein (367aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
Ferredoxin--NADP reductase {ECO:0000255|HAMAP-Rule:MF_01685}; Short=FNR {ECO:0000255|HAMAP-Rule:MF_01685};; Short=Fd-NADP(+) reductase {ECO:0000255|HAMAP-Rule:MF_01685};; EC=1.18.1.2 {ECO:0000255|HAMAP-Rule:MF_01685};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Ferredoxin--NADP reductase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=FENR_POLSJ rbh
04302015_24_scaffold_2255_11
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9551..9898)
DNA (348bp) protein (116aa)
4Fe-4S ferredoxin, iron-sulfur binding protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B35_POLSJ
4Fe-4S ferredoxin; K05524 ferredoxin
4Fe-4S ferredoxin, iron-sulfur binding protein {ECO:0000313|EMBL:ABE44257.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Displaying 12 items

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