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04302015_24_scaffold_180

Search features with annotation key words

Displaying items 1-30 of 49 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_180_1
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1069
DNA (1068bp) protein (356aa)
nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] rbh
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FJ5_POLSJ rbh
04302015_24_scaffold_180_2
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1077..1922
DNA (846bp) protein (282aa)
cobalamin-5'-phosphate synthase (EC:2.7.8.26); K02233 adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] rbh
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000255|HAMAP-Rule:MF_00719}; EC=2.7.8.26 {ECO:0000255|HAMAP-Rule:MF_00719};; Cobalamin synthase {ECO:0000255|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00719}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Cobalamin synthase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=COBS_POLSJ rbh
04302015_24_scaffold_180_3
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2094..2570
DNA (477bp) protein (159aa)
Phosphoglycerate mutase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FJ7_POLSJ
phosphoglycerate mutase
Tax=GWA2_Curvibacter_64_110_curated
04302015_24_scaffold_180_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3012..4802
DNA (1791bp) protein (597aa)
Bilirubin oxidase id=1270439 bin=GWE1_Burkholderiales_65_30 species=Nitrosomonas sp. AL212 genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
04302015_24_scaffold_180_5
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4818..5438
DNA (621bp) protein (207aa)
Electron transport protein SCO1/SenC id=1270440 bin=GWE1_Burkholderiales_65_30 species=Pseudomonas pseudoalcaligenes genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
04302015_24_scaffold_180_6
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5829..6809
DNA (981bp) protein (327aa)
5-nucleotidase; K01081 5'-nucleotidase [EC:3.1.3.5] rbh
5-nucleotidase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FJ8_POLSJ rbh
5-nucleotidase {ECO:0000313|EMBL:ABE42694.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_180_7
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6885..8753
DNA (1869bp) protein (623aa)
ABC transporter-like protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FJ9_POLSJ rbh
ABC transporter-like protein; K02471 putative ATP-binding cassette transporter rbh
ABC transporter-like protein {ECO:0000313|EMBL:ABE42693.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_180_8
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8754..10373
DNA (1620bp) protein (540aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FK0_POLSJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE42692.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_180_9
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10267..11037)
DNA (771bp) protein (257aa)
7-cyano-7-deazaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; EC=6.3.4.20 {ECO:0000255|HAMAP-Rule:MF_01633};; 7-cyano-7-carbaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000255|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000255|HAMAP-Rule:MF_01633}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
7-cyano-7-deazaguanine synthase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=QUEC_POLSJ
ExsB; K06920 queuosine biosynthesis protein QueC
04302015_24_scaffold_180_10
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11251..11505
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4YWV3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJO33403.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
hypothetical protein
04302015_24_scaffold_180_11
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11759..12379
DNA (621bp) protein (207aa)
Nitrilotriacetate monooxygenase component B {ECO:0000313|EMBL:CDS53034.1}; EC=1.14.13.- {ECO:0000313|EMBL:CDS53034.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
Conserved protein of DIM6/NTAB family n=1 Tax=Acidovorax sp. CF316 RepID=J0U5J9_9BURK
hypothetical protein rbh
04302015_24_scaffold_180_12
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12684..13580
DNA (897bp) protein (299aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T4A9_JANMA rbh
hypothetical protein rbh
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR90480.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
04302015_24_scaffold_180_13
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13701..14345
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000304BC1E rbh
Uncharacterized protein {ECO:0000313|EMBL:EMS41661.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
hypothetical protein
04302015_24_scaffold_180_14
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14362..15339
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00037EADB1 rbh
tctC; extracytoplasmic binding receptor rbh
Candidate extracytoplasmic binding receptor {ECO:0000313|EMBL:AEG92782.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
04302015_24_scaffold_180_15

Not on your lists

comp(15376..15522)
DNA (147bp) protein (49aa)
Monocarboxylic acid permease n=1 Tax=mine drainage metagenome RepID=E6PWF0_9ZZZZ
Monocarboxylic acid permease {ECO:0000313|EMBL:CBH99257.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
mctP; Monocarboxylic acid permease
04302015_24_scaffold_180_16

Not on your lists

comp(15577..16917)
DNA (1341bp) protein (447aa)
Monocarboxylic acid permease n=1 Tax=mine drainage metagenome RepID=E6PWF0_9ZZZZ rbh
Monocarboxylic acid permease {ECO:0000313|EMBL:CBH99257.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
mctP; Monocarboxylic acid permease rbh
04302015_24_scaffold_180_17

Not on your lists

comp(16922..17158)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PWE9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH99256.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
conserved hypothetical protein; putative exported protein
04302015_24_scaffold_180_18
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17232..17732)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222B8_RHOFD
hypothetical protein
Tax=CG_Rhodof_02
04302015_24_scaffold_180_19
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(17806..18915)
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029B045C
Tax=RBG_13_Nitrospirae_43_8_curated
04302015_24_scaffold_180_20

Not on your lists

comp(18988..19509)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G7K3_HERAR
permease
Marine sediment metagenome DNA, contig: S06H3_L05550 {ECO:0000313|EMBL:GAI06071.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
04302015_24_scaffold_180_21
unknown

Not on your lists

19650..19946
DNA (297bp) protein (99aa)

This feature has no annotations

04302015_24_scaffold_180_22
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19963..21309)
DNA (1347bp) protein (449aa)
Predicted voltage-gated chloride channel n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V5ZXB2_SERMA rbh
Voltage-gated chloride channel protein ClcB {ECO:0000313|EMBL:KFF76818.1}; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
chloride channel protein EriC rbh
04302015_24_scaffold_180_23
unknown

Not on your lists

comp(21324..21815)
DNA (492bp) protein (164aa)

This feature has no annotations

04302015_24_scaffold_180_24
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21906..22406)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI00030A0512
Uncharacterized protein {ECO:0000313|EMBL:EIJ48686.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
hypothetical protein
04302015_24_scaffold_180_25
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22584..23633)
DNA (1050bp) protein (350aa)
Probable transmembrane protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GPB1_9BURK rbh
Probable transmembrane protein {ECO:0000313|EMBL:EDM84097.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
hypothetical protein
04302015_24_scaffold_180_26
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23630..25465)
DNA (1836bp) protein (612aa)
Candidate histidine kinase, classic n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5A7_RAMTT rbh
Putative Candidate histidine kinase, classic {ECO:0000313|EMBL:CDI02993.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
histidine kinase rbh
04302015_24_scaffold_180_27
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25580..25819
DNA (240bp) protein (80aa)
Uncharacterized protein {ECO:0000313|EMBL:CDI02994.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
04302015_24_scaffold_180_28
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25816..26631
DNA (816bp) protein (272aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D120_VARPS
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:CDI02995.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
two component transcriptional regulator, LuxR family
04302015_24_scaffold_180_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26756..27340
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00037DC330
Uncharacterized protein {ECO:0000313|EMBL:EKS42158.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
04302015_24_scaffold_180_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27337..28623
DNA (1287bp) protein (429aa)
Secretion protein HlyD n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UV09_9SPHN
Secretion protein HlyD {ECO:0000313|EMBL:ENY82285.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
secretion protein HlyD; K03543 multidrug resistance protein A
Displaying items 1-30 of 49 in total

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