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04302015_24_scaffold_557

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_557_1
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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50..379
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FI1_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE42711.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_557_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(477..899)
DNA (423bp) protein (141aa)
60 kDa chaperonin n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=CH60_LEPCP
groEL; chaperonin GroEL; K04077 chaperonin GroEL
60 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00600}; GroEL protein {ECO:0000255|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000255|HAMAP-Rule:MF_00600}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
04302015_24_scaffold_557_3
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(910..1413)
DNA (504bp) protein (168aa)
60 kDa chaperonin n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=CH60_POLSJ
groEL; chaperonin GroEL; K04077 chaperonin GroEL
60 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00600}; GroEL protein {ECO:0000255|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000255|HAMAP-Rule:MF_00600}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_557_4
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1919..2209)
DNA (291bp) protein (97aa)
10 kDa chaperonin n=1 Tax=Polaromonas sp. CF318 RepID=J2L5C8_9BURK
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
groES; co-chaperonin GroES; K04078 chaperonin GroES
04302015_24_scaffold_557_5
unknown

Not on your lists

comp(2323..2574)
DNA (252bp) protein (84aa)

This feature has no annotations

04302015_24_scaffold_557_6
unknown

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2635..2844
DNA (210bp) protein (70aa)

This feature has no annotations

04302015_24_scaffold_557_7
unknown

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2870..3199
DNA (330bp) protein (110aa)

This feature has no annotations

04302015_24_scaffold_557_8
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3257..3658
DNA (402bp) protein (134aa)
Putative membrane protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WP86_9BURK
Putative membrane protein {ECO:0000313|EMBL:EHR70867.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
04302015_24_scaffold_557_9
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3938..4645
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030B77F7
Heme oxygenase BphO {ECO:0000313|EMBL:BAO86611.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
bphO; heme oxygenase BphO
04302015_24_scaffold_557_10
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4638..7061
DNA (2424bp) protein (808aa)
Phytochrome, two-component sensor histidine kinase {ECO:0000313|EMBL:CDS53354.1}; EC=2.7.3.- {ECO:0000313|EMBL:CDS53354.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
multi-sensor signal transduction histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] rbh
Phytochrome, two-component sensor histidine kinase n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W1W9_9BURK rbh
04302015_24_scaffold_557_11
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7051..7539
DNA (489bp) protein (163aa)
Response regulator receiver protein n=1 Tax=Nostoc sp. PCC 7107 RepID=K9Q9U7_9NOSO
Two-component system response regulator {ECO:0000313|EMBL:CDS53353.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
response regulator receiver protein
04302015_24_scaffold_557_12
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7539..10406
DNA (2868bp) protein (956aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3A67 rbh
hybrid histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
04302015_24_scaffold_557_13
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10503..11231
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VK00_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM35978.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_24_scaffold_557_14
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11228..12412)
DNA (1185bp) protein (395aa)
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] id=5082013 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6]
Tax=BJP_08E140C01_Burkholderiales_65_30
04302015_24_scaffold_557_15
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12585..13499
DNA (915bp) protein (305aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
Lipid A biosynthesis acyltransferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FG8_POLSJ
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:ABE42724.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_557_16
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13496..14398
DNA (903bp) protein (301aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] rbh
Lipid A biosynthesis acyltransferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FG7_POLSJ rbh
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:ABE42725.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_557_17
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14550..15449)
DNA (900bp) protein (300aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Polaromonas sp. CF318 RepID=J3D4T4_9BURK rbh
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJL84536.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
alpha/beta hydrolase fold protein rbh
04302015_24_scaffold_557_18
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15527..16267)
DNA (741bp) protein (247aa)
Probable GTP-binding protein EngB n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VK04_POLNA rbh
engB; ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein rbh
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_24_scaffold_557_19
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16405..17067
DNA (663bp) protein (221aa)
Cytochrome c, class I n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VK05_POLNA rbh
Cytochrome c4 {ECO:0000313|EMBL:CDS51313.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
class I cytochrome c rbh
04302015_24_scaffold_557_20
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17269..18948
DNA (1680bp) protein (560aa)
Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U726_PHYPA
ResB-like protein; K07399 cytochrome c biogenesis protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
04302015_24_scaffold_557_21
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18948..20348
DNA (1401bp) protein (467aa)
Cytochrome c assembly protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FG2_POLSJ rbh
cytochrome c assembly protein rbh
Cytochrome c assembly protein {ECO:0000313|EMBL:ABE42730.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_557_22
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20410..21408
DNA (999bp) protein (333aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Sulfoxide reductase catalytic subunit YedY n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FG1_POLSJ rbh
putative sulfite oxidase subunit YedY; K07147 rbh
04302015_24_scaffold_557_23
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21413..21949
DNA (537bp) protein (179aa)
Sulfoxide reductase heme-binding subunit YedZ n=1 Tax=Polaromonas sp. CF318 RepID=J2KWX4_9BURK
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207, ECO:0000256|SAAS:SAAS00016679}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
ferric reductase-like protein transmembrane component-like protein
04302015_24_scaffold_557_24
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21999..22370)
DNA (372bp) protein (124aa)
diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Diaminopimelate decarboxylase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FF9_POLSJ
Displaying 24 items

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