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04302015_24_scaffold_723

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_723_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..495
DNA (495bp) protein (165aa)
hypothetical protein id=5080839 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
04302015_24_scaffold_723_2
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(520..1221)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GI1_POLSJ
hypothetical protein; K06997
Uncharacterized protein {ECO:0000313|EMBL:ABE42361.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_723_3
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1291..3444
DNA (2154bp) protein (718aa)
Pilus retraction protein PilT n=1 Tax=Polaromonas sp. CF318 RepID=J2LHQ5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KFN48912.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
twitching motility protein; K02670 twitching motility protein PilU
04302015_24_scaffold_723_4
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3492..4406
DNA (915bp) protein (305aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60); K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase n=1 Tax=Polaromonas sp. CF318 RepID=J3D4S8_9BURK
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:EJL84709.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_24_scaffold_723_5
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4699..5367)
DNA (669bp) protein (223aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Polaromonas sp. CF318 RepID=J2KXD8_9BURK
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:EJL84710.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
transport protein
04302015_24_scaffold_723_6
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5364..5963)
DNA (600bp) protein (200aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00067}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
phosphoheptose isomerase; K03271 D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] rbh
Phosphoheptose isomerase n=1 Tax=Polaromonas sp. CF318 RepID=J3D528_9BURK rbh
04302015_24_scaffold_723_7
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6033..6500)
DNA (468bp) protein (156aa)
UPF0102 protein Bpro_0391 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Y391_POLSJ
hypothetical protein; K07460 putative endonuclease
UPF0102 protein Bpro_0391 {ECO:0000255|HAMAP-Rule:MF_00048}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_24_scaffold_723_8
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6551..7399
DNA (849bp) protein (283aa)
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] rbh
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12GI8_POLSJ rbh
04302015_24_scaffold_723_9
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7396..8628
DNA (1233bp) protein (411aa)
Drug resistance transporter, Bcr/CflA subfamily n=1 Tax=Polaromonas sp. CF318 RepID=J2TXX9_9BURK rbh
MFS transporter {ECO:0000313|EMBL:CDS52261.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein rbh
04302015_24_scaffold_723_10
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8640..9125)
DNA (486bp) protein (162aa)
Putative lipoprotein transmembrane n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VIW5_POLNA
Putative lipoprotein transmembrane {ECO:0000313|EMBL:CDS52263.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
putative lipoprotein transmembrane
04302015_24_scaffold_723_11
unknown

Not on your lists

comp(9426..9746)
DNA (321bp) protein (107aa)

This feature has no annotations

04302015_24_scaffold_723_12
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9914..10483)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens BBc6R8 RepID=V7EDZ8_PSEFL
Methyltransferase type 12 {ECO:0000313|EMBL:CDS49375.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
methyltransferase
04302015_24_scaffold_723_13
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10545..11354)
DNA (810bp) protein (270aa)
Putative LmbE-like protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KIJ6_9BURK
Putative LmbE-like protein {ECO:0000313|EMBL:EJE50988.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
LmbE family protein
04302015_24_scaffold_723_14
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11342..12424)
DNA (1083bp) protein (361aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q147_ACIAP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADX44052.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
04302015_24_scaffold_723_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12400..13089)
DNA (690bp) protein (230aa)
glycosyl transferase n=1 Tax=Burkholderia sp. JPY251 RepID=UPI000362A022
family 2 glycosyl transferase
Uncharacterized protein {ECO:0000313|EMBL:GAD22047.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
04302015_24_scaffold_723_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13441..14718
DNA (1278bp) protein (426aa)
histidine kinase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034A2A81
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:EIK89136.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
transmembrane sensor kinase vsrA transcription regulator protein
Displaying 16 items

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