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04302015_24_scaffold_352

Search features with annotation key words

Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_352_1
unknown

Not on your lists

2..451
DNA (450bp) protein (150aa)

This feature has no annotations

04302015_24_scaffold_352_2
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

497..1027
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PDC2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EDL48242.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
hypothetical protein
04302015_24_scaffold_352_3
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1179..1976)
DNA (798bp) protein (266aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
thy1; thymidylate synthase (FAD) (EC:2.1.1.148); K03465 thymidylate synthase (FAD) [EC:2.1.1.148]
thymidylate synthase n=1 Tax=Rhizobium meliloti RepID=UPI0003762A63
04302015_24_scaffold_352_4
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2011..3435
DNA (1425bp) protein (475aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Uncharacterized protein id=4876712 bin=GWA2_OP3_52_12 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors rbh
modification methylase NgoPII rbh
04302015_24_scaffold_352_5
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3473..4387
DNA (915bp) protein (305aa)
Uncharacterized protein id=4876711 bin=GWA2_OP3_52_12 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Putative uncharacterized protein {ECO:0000313|EMBL:EFO34074.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
hypothetical protein
04302015_24_scaffold_352_6
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4390..6381
DNA (1992bp) protein (664aa)
Putative uncharacterized protein n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CC25_9RHOB rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EFO34073.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
hypothetical protein rbh
04302015_24_scaffold_352_7
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6536..7384
DNA (849bp) protein (283aa)
Putative uncharacterized protein id=4876709 bin=GWA2_OP3_52_12 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Putative uncharacterized protein {ECO:0000313|EMBL:EFO34072.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
04302015_24_scaffold_352_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7442..7993)
DNA (552bp) protein (184aa)
Resolvase domain n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IHJ5_XANP2
resolvase domain-containing protein
Resolvase domain {ECO:0000313|EMBL:ABS67488.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
04302015_24_scaffold_352_9
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8465..9133)
DNA (669bp) protein (223aa)
UPI0003CE7E57 related cluster n=1 Tax=unknown RepID=UPI0003CE7E57
Uncharacterized protein {ECO:0000313|EMBL:ESY27716.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
hypothetical protein
04302015_24_scaffold_352_10
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9876..13565
DNA (3690bp) protein (1230aa)
exodeoxyribonuclease V (EC:3.1.11.5) rbh
Uncharacterized protein n=1 Tax=Bacillus cereus BAG1X1-2 RepID=J8QBE2_BACCE rbh
Uncharacterized protein {ECO:0000313|EMBL:EJS45941.1}; TaxID=1053171 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus BAG1X1-2.;"
04302015_24_scaffold_352_11
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14055..15926
DNA (1872bp) protein (624aa)
ATP-dependent OLD family endonuclease n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AC23_BURGB rbh
ATP-dependent OLD family endonuclease rbh
ATP-dependent OLD family endonuclease {ECO:0000313|EMBL:ACR29915.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
04302015_24_scaffold_352_12
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16192..18480
DNA (2289bp) protein (763aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9Y4P2_KETVW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEM40599.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
04302015_24_scaffold_352_13
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18886..19545)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IHI8_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS67481.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
04302015_24_scaffold_352_14
unknown

Not on your lists

comp(19948..20667)
DNA (720bp) protein (240aa)

This feature has no annotations

04302015_24_scaffold_352_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20772..20975)
DNA (204bp) protein (68aa)
Phage transcriptional regulator, AlpA n=1 Tax=Afipia sp. 1NLS2 RepID=D6VB11_9BRAD
Phage transcriptional regulator, AlpA {ECO:0000313|EMBL:EFI50088.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
phage transcriptional regulator, AlpA
04302015_24_scaffold_352_16
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21387..21890)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IHI5_XANP2
Uncharacterized protein {ECO:0000313|EMBL:KEJ94969.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
hypothetical protein
04302015_24_scaffold_352_17
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22030..23223)
DNA (1194bp) protein (398aa)
Integrase family protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IHI4_XANP2 rbh
integrase family protein rbh
Integrase family protein {ECO:0000313|EMBL:ABS67477.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
04302015_24_scaffold_352_trna_1
unknown

Not on your lists

comp(23392..23464)
DNA (73bp)
transferRNA
04302015_24_scaffold_352_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23642..24256)
DNA (615bp) protein (205aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQS0_POLNA
antibiotic biosynthesis monooxygenase; K09932 hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_352_19
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24512..27211)
DNA (2700bp) protein (900aa)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein {ECO:0000313|EMBL:ABM37997.1}; EC=1.17.1.4 {ECO:0000313|EMBL:ABM37997.1};; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQR9_POLNA rbh
molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase rbh
04302015_24_scaffold_352_20
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27208..28038)
DNA (831bp) protein (277aa)
Molybdopterin dehydrogenase FAD-binding n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IEU4_XANP2 rbh
molybdopterin dehydrogenase FAD-binding rbh
Molybdopterin dehydrogenase FAD-binding {ECO:0000313|EMBL:ABS66537.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
04302015_24_scaffold_352_21
bacterium YEK0313, Bacteria

Not on your lists

comp(28117..29226)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQ76_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:CEJ11965.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein rbh
04302015_24_scaffold_352_22
Synechococcus sp. WH 7803, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(29709..30113)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037B41A2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK23296.1}; TaxID=32051 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain WH7803).;"
Displaying 23 items

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