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04302015_24_scaffold_61

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Displaying items 1-30 of 97 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_61_1
unknown

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1..99
DNA (99bp) protein (33aa)

This feature has no annotations

04302015_24_scaffold_61_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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138..1526
DNA (1389bp) protein (463aa)
PepSY-associated TM helix family protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QQQ6_9CAUL
Sphingomonas taxi strain 30a NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30210.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
sulfite reductase
04302015_24_scaffold_61_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1573..2043
DNA (471bp) protein (157aa)
Putative nickel-responsive regulator n=1 Tax=Rhodovulum sp. PH10 RepID=J6UJE0_9RHOB
Putative nickel-responsive regulator {ECO:0000256|HAMAP-Rule:MF_00476}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
CopG family transcriptional regulator; K07722 CopG family transcriptional regulator, nickel-responsive regulator
04302015_24_scaffold_61_4
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2242..3657)
DNA (1416bp) protein (472aa)
Cro/Cl family transcriptional regulator n=1 Tax=Sphingomonas wittichii RepID=UPI00035C6FBE rbh
XRE family transcriptional regulator; K07110 rbh
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABQ71129.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
04302015_24_scaffold_61_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3830..5350
DNA (1521bp) protein (507aa)
prpD; 2-methylcitrate dehydratase (EC:4.2.1.79); K01720 2-methylcitrate dehydratase [EC:4.2.1.79] rbh
2-methylcitrate dehydratase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXX5_RHOCS rbh
2-methylcitrate dehydratase {ECO:0000313|EMBL:KJC61227.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
04302015_24_scaffold_61_6
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5363..6541
DNA (1179bp) protein (393aa)
prpC; 2-methylcitrate synthase PrpC (EC:2.3.3.5) rbh
Citrate synthase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8U5_9BRAD rbh
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
04302015_24_scaffold_61_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6547..7485
DNA (939bp) protein (313aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
prpB; carboxyphosphonoenolpyruvate phosphonomutase (EC:2.7.8.23); K01003 carboxyvinyl-carboxyphosphonate phosphorylmutase [EC:2.7.8.23] rbh
methylisocitrate lyase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D5240B rbh
04302015_24_scaffold_61_8
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7516..9846
DNA (2331bp) protein (777aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobac
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] rbh
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WV28_9BRAD rbh
04302015_24_scaffold_61_9
Selenomonas sp. F0473, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

9852..10235
DNA (384bp) protein (128aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000360B852
Dihydroneopterin aldolase {ECO:0000313|EMBL:EKU71447.1}; TaxID=999423 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. F0473.;"
04302015_24_scaffold_61_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10298..12277)
DNA (1980bp) protein (660aa)
methylmalonyl-CoA mutase (EC:5.4.99.2); K14447 (2R)-ethylmalonyl-CoA mutase rbh
Ethylmalonyl-CoA mutase, methylsuccinyl-CoA-forming n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HEQ0_9PROT rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12415..13608
DNA (1194bp) protein (398aa)
Hypothetical membrane spanning protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BSQ4_GRABC
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13611..14672
DNA (1062bp) protein (354aa)
Peptidase, M48 family n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BSQ5_GRABC
M48 family peptidase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_13
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14686..15225)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YTK4_BRASO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL77230.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
04302015_24_scaffold_61_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15274..16143
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2IZ05_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_15
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16140..16826)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI0003656DC2
response regulator receiver domain-containing protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
04302015_24_scaffold_61_16
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16823..17962)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLT8_THISH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL71691.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
04302015_24_scaffold_61_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18173..19621
DNA (1449bp) protein (483aa)
Peptidase M23B n=1 Tax=Oceanibaculum indicum P24 RepID=K2J9T8_9PROT
peptidase M23B
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19631..20125
DNA (495bp) protein (165aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_19
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20193..20693
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D340AB
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_61_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20701..22008)
DNA (1308bp) protein (436aa)
DctM (C4-dicarboxylate permease, large subunit) n=1 Tax=alpha proteobacterium BAL199 RepID=A8TW87_9PROT rbh
putative TRAP-type C4-dicarboxylate transport system, large permease component
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22005..22580)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Kushneria aurantia RepID=UPI00035EFFF3
tripartite AtP-independent periplasmic transporter subunit DctQ
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22640..23647)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TW89_9PROT rbh
TRAP-type C4-dicarboxylate transport system, periplasmic component
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_23
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23732..25324)
DNA (1593bp) protein (531aa)
Putative ABC transporter, ATP-binding protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AI54_RHIET rbh
ABC transporter {ECO:0000313|EMBL:KEA05346.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ABC transporter ATP-binding protein rbh
04302015_24_scaffold_61_24
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25458..26576)
DNA (1119bp) protein (373aa)
Putative racemase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQ08_9PROT rbh
mandelate racemase / L-alanine-DL-glutamate epimerase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27042..28646
DNA (1605bp) protein (535aa)
alpha-isopropylmalate/homocitrate synthase family transferase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] rbh
2-isopropylmalate synthase n=2 Tax=Rhodospirillum rubrum RepID=Q2RWJ6_RHORT rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_26
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28703..29848
DNA (1146bp) protein (382aa)
Multidrug resistance protein EmrA n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AR78_PSERE
emrA; multidrug resistance protein EmrA
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29852..31360
DNA (1509bp) protein (503aa)
EmrB/QacA family drug resistance transporter n=1 Tax=Marinobacter santoriniensis NKSG1 RepID=M7D9G3_9ALTE
emrB; multidrug resistance transporter EmrB
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31379..32143
DNA (765bp) protein (255aa)
Putative tRNA/rRNA methyltransferase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z9R8_AZOL4
putative tRNA/rRNA methyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_29
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32146..32568
DNA (423bp) protein (141aa)
OsmC/Ohr family protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K0M9_9PROT
OsmC/Ohr family protein; K07397 putative redox protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_24_scaffold_61_30
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


32759..33373
DNA (615bp) protein (205aa)
30S ribosomal protein S4 n=3 Tax=Acidiphilium RepID=RS4_ACICJ rbh
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying items 1-30 of 97 in total

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