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04302015_24_scaffold_45

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Displaying items 1-30 of 113 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_45_1
unknown

Not on your lists

comp(2..133)
DNA (132bp) protein (44aa)

This feature has no annotations

04302015_24_scaffold_45_2
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(226..1527)
DNA (1302bp) protein (434aa)
Amidohydrolase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTR9_SPHAL rbh
amidohydrolase rbh
Amidohydrolase {ECO:0000313|EMBL:ABF52953.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
04302015_24_scaffold_45_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1611..2261)
DNA (651bp) protein (217aa)
Phosphatidylglycerophosphatase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W961_9SPHN
Putative secreted protein {ECO:0000313|EMBL:AJA08679.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
04302015_24_scaffold_45_4
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2258..3649)
DNA (1392bp) protein (464aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] rbh
Dihydrolipoyl dehydrogenase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EUN6_SPHCR rbh
04302015_24_scaffold_45_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3651..4925)
DNA (1275bp) protein (425aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] rbh
Dihydrolipoamide acetyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8D8_9SPHN rbh
04302015_24_scaffold_45_6
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5010..5534
DNA (525bp) protein (175aa)
universal stress protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B4D13A
Usp family protein {ECO:0000313|EMBL:GAO37927.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
UspA domain-containing protein
04302015_24_scaffold_45_7
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5531..7804)
DNA (2274bp) protein (758aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
exoribonuclease R (EC:3.1.13.1); K12573 ribonuclease R [EC:3.1.-.-] rbh
Ribonuclease R n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J2B0_9SPHN rbh
04302015_24_scaffold_45_8
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7808..9337)
DNA (1530bp) protein (510aa)
prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15] rbh
Proline--tRNA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8D2_9SPHN rbh
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
04302015_24_scaffold_45_9
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9377..9934)
DNA (558bp) protein (186aa)
polyhydroxyalkanoate synthesis repressor PhaR n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B3D79D
polyhydroxyalkonate synthesis repressor PhaR
Polyhydroxyalkonate synthesis repressor PhaR {ECO:0000313|EMBL:AGH50952.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
04302015_24_scaffold_45_10
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10249..13455
DNA (3207bp) protein (1069aa)
TonB-dependent receptor n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD06A0 rbh
TonB-dependent receptor {ECO:0000313|EMBL:KGB51357.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
TonB-dependent receptor rbh
04302015_24_scaffold_45_11
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13546..14589)
DNA (1044bp) protein (348aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
alr; putative alanine racemase; K01775 alanine racemase [EC:5.1.1.1] rbh
UPI0003D049CB related cluster n=1 Tax=unknown RepID=UPI0003D049CB rbh
04302015_24_scaffold_45_12
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14621..16207)
DNA (1587bp) protein (529aa)
UPI0003D00E8D related cluster n=1 Tax=unknown RepID=UPI0003D00E8D rbh
Major facilitator transporter {ECO:0000313|EMBL:ESZ86165.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
major facilitator transporter rbh
04302015_24_scaffold_45_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16319..17086
DNA (768bp) protein (256aa)
Putative cyclase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8C7_9SPHN rbh
Putative cyclase {ECO:0000313|EMBL:ENY79983.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative cyclase rbh
04302015_24_scaffold_45_14
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17101..19122)
DNA (2022bp) protein (674aa)
carbamoyl-phosphate synthase subunit L; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] rbh
Carbamoyl-phosphate synthase L chain, ATP-binding n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTT4_SPHAL rbh
Carbamoyl-phosphate synthase L chain, ATP-binding {ECO:0000313|EMBL:KHS48832.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
04302015_24_scaffold_45_15
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19122..19472)
DNA (351bp) protein (117aa)
D-fructose-6-phosphate amidotransferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQ97_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KCZ87410.1}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
hypothetical protein
04302015_24_scaffold_45_16
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19501..20508)
DNA (1008bp) protein (336aa)
biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6] rbh
biotin synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B341D2 rbh
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
04302015_24_scaffold_45_17
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20505..22628)
DNA (2124bp) protein (708aa)
methylmalonyl-CoA mutase; K01847 methylmalonyl-CoA mutase [EC:5.4.99.2] rbh
UPI0003CFF350 related cluster n=1 Tax=unknown RepID=UPI0003CFF350 rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_45_18
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22739..23524)
DNA (786bp) protein (262aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:KHS48419.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KHS48419.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
enoyl-CoA hydratase (EC:4.2.1.17); K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] rbh
Enoyl-CoA hydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G736_NOVAD rbh
04302015_24_scaffold_45_19
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23571..24008)
DNA (438bp) protein (146aa)
glyoxalase/bleomycin resistance protein/dioxygenase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:ABF52935.1}; EC=5.1.99.1 {ECO:0000313|EMBL:ABF52935.1};; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
Methylmalonyl-CoA epimerase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTT7_SPHAL
04302015_24_scaffold_45_20
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24018..25544)
DNA (1527bp) protein (509aa)
carboxyl transferase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] rbh
Propionyl-CoA carboxylase carboxyltransferase subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA70_NOVAD rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
04302015_24_scaffold_45_21
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25689..26630
DNA (942bp) protein (314aa)
UPF0176 protein NAP1_07615 n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WAZ2_9SPHN rbh
UPF0176 protein NAP1_07615 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
hypothetical protein; K07146 UPF0176 protein rbh
04302015_24_scaffold_45_22
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26683..27252
DNA (570bp) protein (190aa)
UPI0003D06D46 related cluster n=1 Tax=unknown RepID=UPI0003D06D46
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_45_23
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27313..28659)
DNA (1347bp) protein (449aa)
Glutathione reductase {ECO:0000313|EMBL:AJA08707.1}; EC=1.8.1.7 {ECO:0000313|EMBL:AJA08707.1};; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
gor; glutathione reductase (NADPH) (EC:1.8.1.7); K00383 glutathione reductase (NADPH) [EC:1.8.1.7] rbh
Glutathione reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDJ7_9SPHN rbh
04302015_24_scaffold_45_24
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28754..30256)
DNA (1503bp) protein (501aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9) rbh
glucose-6-phosphate isomerase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B57B8A rbh
04302015_24_scaffold_45_25
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30377..31261
DNA (885bp) protein (295aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] rbh
signal peptidase n=1 Tax=Alphaproteobacteria RepID=UPI000262C257 rbh
04302015_24_scaffold_45_26
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31297..31926
DNA (630bp) protein (210aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
rnc; ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3]
Ribonuclease 3 n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0IXS9_9SPHN
04302015_24_scaffold_45_27
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31923..32816
DNA (894bp) protein (298aa)
GTPase Era n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HDZ6_9SPHN rbh
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
era; GTP-binding protein Era; K03595 GTP-binding protein Era rbh
04302015_24_scaffold_45_28
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32883..35426)
DNA (2544bp) protein (848aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
topA; DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] rbh
DNA topoisomerase 1 n=1 Tax=Sphingobium lactosutens DS20 RepID=T0INK9_9SPHN rbh
04302015_24_scaffold_45_29
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35507..36601)
DNA (1095bp) protein (365aa)
DNA processing protein DprA n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEED rbh
DNA, contig: SP618 {ECO:0000313|EMBL:GAN13494.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
DNA protecting protein DprA rbh
04302015_24_scaffold_45_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36610..37209)
DNA (600bp) protein (200aa)
glycerol-3-phosphate acyltransferase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B3B285
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043, ECO:0000313|EMBL:AJP73869.1}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
putative membrane protein YgiH
Displaying items 1-30 of 113 in total

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