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04302015_24_scaffold_62

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Displaying items 1-30 of 114 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_62_1

Not on your lists

comp(1..1329)
DNA (1329bp) protein (443aa)
Siderophore 2,3-dihydroxybenzoate synthesis-like protein n=1 Tax=uncultured marine bacterium 1n22 RepID=D2DIQ1_9BACT
Siderophore 2,3-dihydroxybenzoate synthesis-like protein {ECO:0000313|EMBL:ACX49739.1}; TaxID=662659 species="Bacteria; environmental samples.;" source="uncultured marine bacterium 1n22.;"
siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin synthetase; K04780 nonribosomal peptide synthetase DhbF
04302015_24_scaffold_62_2
Streptomyces rishiriensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1839..2051
DNA (213bp) protein (71aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EHJ3_9SPHN
CouY {ECO:0000313|EMBL:AAG29779.1}; TaxID=68264 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rishiriensis.;"
MbtH domain-containing protein; K05375 MbtH protein
04302015_24_scaffold_62_3

Not on your lists

2095..2859
DNA (765bp) protein (255aa)
4'-phosphopantetheinyl transferase; K06133 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
Putative phosphopantetheinyl transferase n=1 Tax=Aplysina aerophoba bacterial symbiont clone AANRPS RepID=F8S2Z7_9BACT
Putative phosphopantetheinyl transferase {ECO:0000313|EMBL:AEH95301.1}; TaxID=1042317 species="Bacteria; environmental samples.;" source="Aplysina aerophoba bacterial symbiont clone AANRPS.;"
04302015_24_scaffold_62_4
unknown

Not on your lists

3003..3341
DNA (339bp) protein (113aa)

This feature has no annotations

04302015_24_scaffold_62_5
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3426..5105
DNA (1680bp) protein (560aa)
Integrase family protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LN03_DINSH
Uncharacterized protein {ECO:0000313|EMBL:EYD76041.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
xerDC1; integrase family protein
04302015_24_scaffold_62_6
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5102..6184
DNA (1083bp) protein (361aa)
Putative uncharacterized protein n=1 Tax=uncultured Rhodospirillales bacterium HF4000_24M03 RepID=E0XW31_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EYD76040.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
putative integrase
04302015_24_scaffold_62_7
unknown

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6184..6918
DNA (735bp) protein (245aa)

This feature has no annotations

04302015_24_scaffold_62_8
unknown

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6968..7135
DNA (168bp) protein (56aa)

This feature has no annotations

04302015_24_scaffold_62_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7185..8846
DNA (1662bp) protein (554aa)
Resolvase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4C4_9BRAD rbh
Resolvase domain protein {ECO:0000313|EMBL:EFI52804.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
resolvase rbh
04302015_24_scaffold_62_trna_1
unknown

Not on your lists

comp(8808..8881)
DNA (74bp)
transferRNA
04302015_24_scaffold_62_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8917..9405)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B37F74
Uncharacterized protein {ECO:0000313|EMBL:GAD47921.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
04302015_24_scaffold_62_11
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9405..9713)
DNA (309bp) protein (103aa)
Glutaredoxin 3 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPX4_9SPHN
Glutaredoxin {ECO:0000313|EMBL:KEO91490.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
glutaredoxin; K03676 glutaredoxin 3
04302015_24_scaffold_62_12
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9723..10469)
DNA (747bp) protein (249aa)
amidophosphoribosyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002632136
phosphoribosyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_62_13
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10511..11371
DNA (861bp) protein (287aa)
methyltransferase type 11 n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B38191
type 11 methyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_62_14
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11368..11775)
DNA (408bp) protein (136aa)
NUDIX hydrolase; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
UPI0003CFC3A9 related cluster n=1 Tax=unknown RepID=UPI0003CFC3A9
Tax=GWF1_Sphingomonadales_63_6_curated
04302015_24_scaffold_62_15
unknown

Not on your lists

11826..12032
DNA (207bp) protein (69aa)

This feature has no annotations

04302015_24_scaffold_62_16
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12143..12310
DNA (168bp) protein (56aa)
Flp/Fap pilin component n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EWN6_SPHCR
Uncharacterized protein {ECO:0000313|EMBL:KFL47845.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
Flp/Fap pilin component; K02651 pilus assembly protein Flp/PilA
04302015_24_scaffold_62_17
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12387..13880)
DNA (1494bp) protein (498aa)
UPI0003D04E3B related cluster n=1 Tax=unknown RepID=UPI0003D04E3B rbh
peptidase M48, Ste24p rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
04302015_24_scaffold_62_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13981..14925)
DNA (945bp) protein (315aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium y
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] rbh
acetyl-CoA carboxylase subunit alpha n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B66356 rbh
04302015_24_scaffold_62_19
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14922..15848)
DNA (927bp) protein (309aa)
Tyrosine recombinase XerC n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IX45_9SPHN rbh
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
xerD; integrase/recombinase XerD; K04763 integrase/recombinase XerD rbh
04302015_24_scaffold_62_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15880..17682)
DNA (1803bp) protein (601aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B2FFA4 rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP72928.1}; Flags: Precursor;; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein rbh
04302015_24_scaffold_62_21
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17935..18498
DNA (564bp) protein (188aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Shikimate kinase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V265_SPHWW
04302015_24_scaffold_62_22
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18495..19601
DNA (1107bp) protein (369aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
aro1; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
3-dehydroquinate synthase n=1 Tax=Sphingomonas elodea RepID=UPI0002632142 rbh
04302015_24_scaffold_62_23
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19592..21379)
DNA (1788bp) protein (596aa)
sodium/hydrogen exchanger n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B41C46 rbh
sodium/hydrogen exchanger; K11747 glutathione-regulated potassium-efflux system protein KefB rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_62_24
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21379..21690)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6X9_NOVAD
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
04302015_24_scaffold_62_25
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21810..22334)
DNA (525bp) protein (175aa)
colicin V production protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B48FA4
Colicin V production protein {ECO:0000313|EMBL:EQA96640.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
cvpA; membrane protein required for colicin V production; K03558 membrane protein required for colicin V production
04302015_24_scaffold_62_26
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22452..23816)
DNA (1365bp) protein (455aa)
DNA repair protein radA n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IP16_9SPHN rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms rbh
04302015_24_scaffold_62_27
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23910..26249
DNA (2340bp) protein (780aa)
Patatin n=1 Tax=Sphingobium ummariense RL-3 RepID=T0ITE5_9SPHN rbh
Patatin {ECO:0000313|EMBL:EQB32105.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
patatin rbh
04302015_24_scaffold_62_28
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26273..27397)
DNA (1125bp) protein (375aa)
Chaperone protein DnaJ n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0JAG9_9SPHN rbh
molecular chaperone DnaJ; K03686 molecular chaperone DnaJ rbh
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
04302015_24_scaffold_62_29
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(27466..29370)
DNA (1905bp) protein (635aa)
Chaperone protein DnaK n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S172_9SPHN rbh
dnaK; molecular chaperone DnaK rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Displaying items 1-30 of 114 in total

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