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04302015_24_scaffold_129

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_129_1
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..135)
DNA (135bp) protein (45aa)
S-(hydroxymethyl)glutathione dehydrogenase (EC:1.1.1.284)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; Flags: Fragment;; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
alcohol dehydrogenase n=1 Tax=Ponticaulis koreensis RepID=UPI0003B2F379
04302015_24_scaffold_129_2
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(197..970)
DNA (774bp) protein (258aa)
molybdopterin-binding protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A744 rbh
Putative oxidoreductase {ECO:0000313|EMBL:GAO40895.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
molybdopterin-binding oxidoreductase; K07147 rbh
04302015_24_scaffold_129_3
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(967..1785)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GVW1_SPHAL rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
04302015_24_scaffold_129_4
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1858..2784)
DNA (927bp) protein (309aa)
Chromosome partitioning protein ParB n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0I357_9SPHN rbh
Chromosome partitioning protein ParB {ECO:0000313|EMBL:GAO40096.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
parB-like partition protein; K03497 chromosome partitioning protein, ParB family rbh
04302015_24_scaffold_129_5
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2781..3560)
DNA (780bp) protein (260aa)
Chromosome partitioning protein ParA n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GZA4_9SPHN rbh
Chromosome partitioning protein ParA {ECO:0000313|EMBL:EQB06052.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
Cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein rbh
04302015_24_scaffold_129_6
Zymomonas mobilis, Zymomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3557..4225)
DNA (669bp) protein (223aa)
methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G {ECO:0000255|HAMAP-Rule:MF_00074}; EC=2.1.1.170 {ECO:0000255|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074}; Short=16S rRNA m7G methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074};; TaxID=264203 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas.;" source="Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4).;"
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00031FFC23
04302015_24_scaffold_129_7
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4222..6096)
DNA (1875bp) protein (625aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002D341C7 rbh
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_129_8
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6168..7463)
DNA (1296bp) protein (432aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
thdF; tRNA modification GTPase; K03650 tRNA modification GTPase [EC:3.6.-.-] rbh
tRNA modification GTPase TrmE n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B40DFF rbh
04302015_24_scaffold_129_9
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7471..7731)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFB0_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA90985.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
04302015_24_scaffold_129_10
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7821..8531
DNA (711bp) protein (237aa)
carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] rbh
UPI0003D00E6B related cluster n=1 Tax=unknown RepID=UPI0003D00E6B rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_129_11
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8566..9312)
DNA (747bp) protein (249aa)
Integral membrane protein TerC n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GP71_SPHAL rbh
Integral membrane protein TerC {ECO:0000313|EMBL:KGB54642.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
integral membrane protein TerC rbh
04302015_24_scaffold_129_12
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9328..10584)
DNA (1257bp) protein (419aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
transcription termination factor Rho n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B7546F rbh
rho; transcription termination factor Rho; K03628 transcription termination factor Rho rbh
04302015_24_scaffold_129_13
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10799..11242)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00037A38C0
Uncharacterized protein {ECO:0000313|EMBL:EHJ61254.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein; K08973 putative membrane protein
04302015_24_scaffold_129_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11261..12292)
DNA (1032bp) protein (344aa)
hemE; uroporphyrinogen decarboxylase; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] rbh
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Uroporphyrinogen decarboxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS33_9SPHN rbh
04302015_24_scaffold_129_15
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12595..13428
DNA (834bp) protein (278aa)
PEP synthetase regulatory protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00030F5B26 rbh
hypothetical protein; K09773 hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_129_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13425..14021
DNA (597bp) protein (199aa)
septum formation protein Maf n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD04E
maf protein; K06287 septum formation protein
Maf-like protein SCH01S_42_01260 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
04302015_24_scaffold_129_17
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14018..14827
DNA (810bp) protein (270aa)
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] rbh
shikimate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B70971 rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
04302015_24_scaffold_129_18
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14866..15423
DNA (558bp) protein (186aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
coaE; dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H8D6_9SPHN
04302015_24_scaffold_129_19
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15455..16162
DNA (708bp) protein (236aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III subunit epsilon n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K361_9SPHN rbh
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:EQB31024.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
04302015_24_scaffold_129_20
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16178..16753
DNA (576bp) protein (192aa)
Ribosome-associated protein Y n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L9E2_9SPHN
Ribosome-associated protein Y {ECO:0000313|EMBL:EIZ81134.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
ribosome-associated protein Y
04302015_24_scaffold_129_21
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16806..17309
DNA (504bp) protein (168aa)
PTS IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
nitrogen regulatory protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AAF2
Uncharacterized protein {ECO:0000313|EMBL:AHE56697.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
04302015_24_scaffold_129_22
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17306..17647
DNA (342bp) protein (114aa)
UPI0003CFF577 related cluster n=1 Tax=unknown RepID=UPI0003CFF577
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_129_23
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17816..18511
DNA (696bp) protein (232aa)
hydrolase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B796E5
cell wall hydrolase SleB
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_24_scaffold_129_24
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18588..19073
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1ND90_9SPHN
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
04302015_24_scaffold_129_25
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19086..21020)
DNA (1935bp) protein (645aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B5E5AF rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO86502.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein rbh
04302015_24_scaffold_129_26
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21099..21890)
DNA (792bp) protein (264aa)
Sterol desaturase, homolog n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N7Q1_ERYLH
sterol desaturase
Sterol desaturase, homolog {ECO:0000313|EMBL:ABC64290.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
04302015_24_scaffold_129_27
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21896..22990)
DNA (1095bp) protein (365aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GNT3_SPHAL rbh
NADH:flavin oxidoreductase rbh
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:ABF54689.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
04302015_24_scaffold_129_28
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23048..23935
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URP4_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
04302015_24_scaffold_129_29
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23965..24642
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003658013
Putative ubiquinone biosynthesis protein {ECO:0000313|EMBL:GAO40032.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
04302015_24_scaffold_129_30
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24691..24933
DNA (243bp) protein (81aa)
iron transporter FeoA n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B4FB64
Uncharacterized protein {ECO:0000313|EMBL:EIZ80921.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein; K04758 ferrous iron transport protein A
Displaying items 1-30 of 60 in total

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