ggKbase home page

04302015_24_scaffold_182

Search features with annotation key words

Displaying items 1-30 of 47 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_182_1
Flavobacteria bacterium BAL38, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..277)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI0002E7E60D
Putative ATP/GTP-binding protein {ECO:0000313|EMBL:EAZ94386.1}; TaxID=391598 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteria bacterium BAL38.;"
rloH; ATP/GTP-binding protein
04302015_24_scaffold_182_2
CG_Epsilon_02, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(278..1141)
DNA (864bp) protein (288aa)
DNA adenine methylase (EC:2.1.1.72); K06223 DNA adenine methylase [EC:2.1.1.72] rbh
DNA adenine methylase n=1 Tax=Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) RepID=D5V7L4_ARCNC rbh
Tax=CG_Epsilon_02
04302015_24_scaffold_182_3
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1214..2494)
DNA (1281bp) protein (427aa)
Homoserine dehydrogenase {ECO:0000313|EMBL:EIF50370.1}; EC=1.1.1.3 {ECO:0000313|EMBL:EIF50370.1};; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] rbh
Homoserine dehydrogenase n=1 Tax=Sulfurovum sp. AR RepID=I2K568_9PROT rbh
04302015_24_scaffold_182_4
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2496..3722)
DNA (1227bp) protein (409aa)
Aspartate aminotransferase {ECO:0000313|EMBL:EIF50371.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EIF50371.1};; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
aspartate aminotransferase (EC:2.6.1.1); K14261 alanine-synthesizing transaminase [EC:2.6.1.-] rbh
Aspartate aminotransferase n=1 Tax=Sulfurovum sp. AR RepID=I2K569_9PROT rbh
04302015_24_scaffold_182_5
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3722..4294)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. AR RepID=I2K570_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EIF50372.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
hypothetical protein
04302015_24_scaffold_182_6
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4281..4982)
DNA (702bp) protein (234aa)
RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] rbh
RNA methyltransferase n=1 Tax=Sulfurovum sp. AR RepID=I2K571_9PROT rbh
RNA methyltransferase {ECO:0000313|EMBL:EIF50373.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
04302015_24_scaffold_182_7
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5017..5832)
DNA (816bp) protein (272aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] rbh
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Sulfurovum sp. AR RepID=I2K572_9PROT rbh
04302015_24_scaffold_182_8
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5907..6107)
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=1 Tax=Sulfurovum sp. AR RepID=I2K573_9PROT
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
rpmE; 50S ribosomal protein L31
04302015_24_scaffold_182_9
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6255..6989)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. AR RepID=I2K574_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EIF50376.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
hypothetical protein rbh
04302015_24_scaffold_182_10
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7023..7691)
DNA (669bp) protein (223aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
16S ribosomal RNA methyltransferase RsmE; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] rbh
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Sulfurovum sp. AR RepID=I2K575_9PROT rbh
04302015_24_scaffold_182_11
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7694..8119)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. AR RepID=I2K576_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EIF50378.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
hypothetical protein
04302015_24_scaffold_182_12
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

8204..9421
DNA (1218bp) protein (406aa)
moeA; molybdopterin biosynthesis protein MoeA; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] rbh
Molybdopterin biosynthesis protein MoeA n=1 Tax=Sulfurovum sp. AR RepID=I2K577_9PROT rbh
Molybdopterin biosynthesis protein MoeA {ECO:0000313|EMBL:EIF50379.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
04302015_24_scaffold_182_13
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9431..10012)
DNA (582bp) protein (194aa)
6-pyruvoyl-tetrahydropterin synthase (EC:4.2.3.12); K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] rbh
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Sulfurovum sp. AR RepID=I2K579_9PROT rbh
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000313|EMBL:EIF50381.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
04302015_24_scaffold_182_14
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10073..10831)
DNA (759bp) protein (253aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Sulfurovum sp. AR RepID=I2K580_9PROT rbh
hypothetical protein rbh
04302015_24_scaffold_182_15
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10831..11808)
DNA (978bp) protein (326aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Sulfurovum sp. AR RepID=I2K581_9PROT rbh
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein rbh
04302015_24_scaffold_182_16
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12000..12986)
DNA (987bp) protein (329aa)
Ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit n=1 Tax=Sulfurovum sp. AR RepID=I2K582_9PROT rbh
Ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit {ECO:0000313|EMBL:EIF50384.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit; K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit
04302015_24_scaffold_182_17
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12988..14217)
DNA (1230bp) protein (410aa)
ubiquinol cytochrome c oxidoreductase, cytochrome b subunit (EC:1.10.2.2); K00412 ubiquinol-cytochrome c reductase cytochrome b subunit rbh
Cytochrome b n=1 Tax=Sulfurovum sp. AR RepID=I2K583_9PROT rbh
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
04302015_24_scaffold_182_18
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14227..14742)
DNA (516bp) protein (172aa)
petA; ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit (EC:1.10.2.2)
Ubiquinol-cytochrome c reductase, iron-sulfur subunit n=1 Tax=Sulfurovum sp. AR RepID=I2K584_9PROT
Ubiquinol-cytochrome c reductase, iron-sulfur subunit {ECO:0000313|EMBL:EIF50386.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
04302015_24_scaffold_182_19
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14922..15716)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. AR RepID=I2K9T5_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EIF51987.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
04302015_24_scaffold_182_20
Sulfurospirillum sp. MES, Sulfurospirillum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15765..16448)
DNA (684bp) protein (228aa)
HAD-superfamily hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Sulfurospirillum deleyianum (strain ATCC 51133 / DSM 6946 / 5175) RepID=D1B494_SULD5
Hydrolase {ECO:0000313|EMBL:KHG33879.1}; TaxID=1565314 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Sulfurospirillum.;" source="Sulfurospirillum sp. MES.;"
04302015_24_scaffold_182_21
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16558..16932)
DNA (375bp) protein (125aa)
Thiol-disulfide oxidoreductase dcc n=1 Tax=Sulfurovum sp. AR RepID=I2K9V1_9PROT
Thiol-disulfide oxidoreductase dcc {ECO:0000313|EMBL:EIF52003.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
thiol-disulfide oxidoreductase DCC
04302015_24_scaffold_182_22
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16956..18830)
DNA (1875bp) protein (625aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Sulfurovum sp. AR RepID=I2K585_9PROT rbh
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme rbh
04302015_24_scaffold_182_23
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

18928..19545
DNA (618bp) protein (206aa)
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:EIF50388.1}; EC=2.5.1.9 {ECO:0000313|EMBL:EIF50388.1};; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] rbh
Riboflavin synthase subunit alpha n=1 Tax=Sulfurovum sp. AR RepID=I2K586_9PROT rbh
04302015_24_scaffold_182_24
unknown

Not on your lists

comp(19577..19927)
DNA (351bp) protein (117aa)

This feature has no annotations

04302015_24_scaffold_182_25
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19953..20735)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. AR RepID=I2K588_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EIF50390.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
hypothetical protein rbh
04302015_24_scaffold_182_26
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20742..21260)
DNA (519bp) protein (173aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
S-ribosylhomocysteinase (EC:4.4.1.21); K07173 S-ribosylhomocysteine lyase [EC:4.4.1.21]
S-ribosylhomocysteine lyase n=1 Tax=Sulfurovum sp. AR RepID=I2K589_9PROT
04302015_24_scaffold_182_27
Sulfurovum sp. AS07-7, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21315..22787)
DNA (1473bp) protein (491aa)
Putative membrane protein n=1 Tax=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) RepID=B9L9R3_NAUPA rbh
Uncharacterized protein {ECO:0000313|EMBL:KIM04571.1}; TaxID=1539062 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AS07-7.;"
hypothetical protein rbh
04302015_24_scaffold_182_28
Sulfurovum sp. NBC37-1, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22914..23303)
DNA (390bp) protein (130aa)
30S ribosomal protein S9 n=1 Tax=Sulfurovum sp. (strain NBC37-1) RepID=RS9_SULNB
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
30S ribosomal protein S9 {ECO:0000255|HAMAP-Rule:MF_00532}; TaxID=387093 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. (strain NBC37-1).;"
04302015_24_scaffold_182_29
Sulfurovum sp. NBC37-1, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23306..23731)
DNA (426bp) protein (142aa)
50S ribosomal protein L13 n=1 Tax=Sulfurovum sp. (strain NBC37-1) RepID=RL13_SULNB
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
50S ribosomal protein L13 {ECO:0000255|HAMAP-Rule:MF_01366}; TaxID=387093 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. (strain NBC37-1).;"
04302015_24_scaffold_182_30
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23885..26617)
DNA (2733bp) protein (911aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
recombination protein RecB; K03582 exodeoxyribonuclease V beta subunit [EC:3.1.11.5] rbh
Putative recombination protein RecB n=1 Tax=Sulfurovum sp. AR RepID=I2K599_9PROT rbh
Displaying items 1-30 of 47 in total

View Taxonomy