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04302015_24_scaffold_415

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_24_scaffold_415_1
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

112..681
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. AR RepID=I2K5X8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EIF50630.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
04302015_24_scaffold_415_2
Sulfurospirillum sp. SCADC, Sulfurospirillum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

846..1073
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Arcobacter butzleri 7h1h RepID=S5P998_9PROT
CopG family transcriptional regulator {ECO:0000313|EMBL:KFL34446.1}; TaxID=1537915 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Sulfurospirillum.;" source="Sulfurospirillum sp. SCADC.;"
hypothetical protein
04302015_24_scaffold_415_3
Arcobacter butzleri, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

1063..1401
DNA (339bp) protein (113aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1036172 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter.;" source="Arcobacter butzleri 7h1h.;"
PemK family protein n=1 Tax=Arcobacter butzleri 7h1h RepID=S5PAK0_9PROT
PemK family protein
04302015_24_scaffold_415_4
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

1413..2729
DNA (1317bp) protein (439aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1165841 species="Bacteria; Pr
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Sulfurovum sp. AR RepID=I2K5X9_9PROT rbh
tRNA modifying enzyme rbh
04302015_24_scaffold_415_5
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

2866..3897
DNA (1032bp) protein (344aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
tRNA-lysidine synthase (EC:6.3.4.-); K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] rbh
tRNA(Ile)-lysidine synthase n=1 Tax=Sulfurovum sp. AR RepID=I2K5Y0_9PROT rbh
04302015_24_scaffold_415_6
Sulfurovum sp. NBC37-1, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3839..4681)
DNA (843bp) protein (281aa)
Site-specific recombinase, phage integrase family n=1 Tax=Sulfurovum sp. (strain NBC37-1) RepID=A6QCC8_SULNB rbh
phage integrase family site specific recombinase; K03733 integrase/recombinase XerC rbh
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:BAF73137.1}; TaxID=387093 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. (strain NBC37-1).;"
04302015_24_scaffold_415_7
Sulfurovum sp. NBC37-1, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4752..5354)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. (strain NBC37-1) RepID=A6QCC9_SULNB
hypothetical protein; K09778 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF73138.1}; TaxID=387093 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. (strain NBC37-1).;"
04302015_24_scaffold_415_8
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5364..6623)
DNA (1260bp) protein (420aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Sulfurovum sp. AR RepID=I2K5Y3_9PROT rbh
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA rbh
04302015_24_scaffold_415_9
Sulfurovum lithotrophicum, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6741..6980)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. (strain NBC37-1) RepID=A6QCD1_SULNB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKF24074.1}; TaxID=206403 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum lithotrophicum.;"
04302015_24_scaffold_415_10
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

7189..8352
DNA (1164bp) protein (388aa)
Transcription elongation factor NusA n=1 Tax=Sulfurovum sp. AR RepID=I2K5Y5_9PROT rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A rbh
04302015_24_scaffold_415_11
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8391..9080)
DNA (690bp) protein (230aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] rbh
Triosephosphate isomerase n=1 Tax=Sulfurovum sp. AR RepID=I2K5Y6_9PROT rbh
04302015_24_scaffold_415_12
Sulfurovum sp. FS06-10, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9098..10288)
DNA (1191bp) protein (397aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1539064 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. FS06-10.;"
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] rbh
Phosphoglycerate kinase n=1 Tax=Sulfurovum sp. AR RepID=I2K5Y7_9PROT rbh
04302015_24_scaffold_415_13
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10297..11292)
DNA (996bp) protein (332aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] rbh
Glyceraldehyde 3-phosphate dehydrogenase n=1 Tax=Sulfurovum sp. AR RepID=I2K5Y8_9PROT rbh
04302015_24_scaffold_415_14
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

11354..12271
DNA (918bp) protein (306aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Nicotinate-nucleotide adenylyltransferase n=1 Tax=Sulfurovum sp. AR RepID=I2K5Y9_9PROT rbh
04302015_24_scaffold_415_15
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12307..12633)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. AR RepID=I2K5Z0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EIF50642.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
hypothetical protein
04302015_24_scaffold_415_16
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12646..14343)
DNA (1698bp) protein (566aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] rbh
Arginine--tRNA ligase n=1 Tax=Sulfurovum sp. AR RepID=I2K5Z1_9PROT rbh
04302015_24_scaffold_415_17
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14425..14649)
DNA (225bp) protein (75aa)
Sec-independent protein translocase protein TatA n=1 Tax=Sulfurovum sp. AR RepID=I2K5Z2_9PROT
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
twin arginine-targeting protein translocase; K03116 sec-independent protein translocase protein TatA
04302015_24_scaffold_415_18
Sulfurovum sp. NBC37-1, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14715..15332)
DNA (618bp) protein (206aa)
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] rbh
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=387093 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. (strain NBC37-1).;"
Guanylate kinase n=1 Tax=Sulfurovum sp. (strain NBC37-1) RepID=A6QCE1_SULNB rbh
04302015_24_scaffold_415_19
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15332..16084)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. AR RepID=I2K5Z3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EIF50645.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
hypothetical protein
04302015_24_scaffold_415_20
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(16161..17465)
DNA (1305bp) protein (435aa)
Outer membrane efflux protein id=1859497 bin=GWB2_Ignavibacteria_35_12 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good rbh
outer membrane efflux protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
04302015_24_scaffold_415_21
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(17476..18552)
DNA (1077bp) protein (359aa)
Putative uncharacterized protein id=4933083 bin=GWA2_Ignavibacteria-rel_35_8 species=Legionella drancourtii genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
putative membrane-fusion protein of multidrug efflux transporter
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
04302015_24_scaffold_415_22
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(18539..21664)
DNA (3126bp) protein (1042aa)
Putative uncharacterized protein id=4933083 bin=GWA2_Ignavibacteria-rel_35_8 species=Legionella drancourtii genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria rbh
cation/multidrug efflux pump rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
04302015_24_scaffold_415_23
Sulfurovum lithotrophicum, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21739..22818)
DNA (1080bp) protein (360aa)
Sodium:sulfate symporter n=1 Tax=Sulfurovum sp. AR RepID=I2K971_9PROT rbh
Anion transporter {ECO:0000313|EMBL:AKF25128.1}; TaxID=206403 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum lithotrophicum.;"
sodium:sulfate symporter rbh
04302015_24_scaffold_415_24
Sulfurospirillum multivorans, Sulfurospirillum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

22940..23374
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI00037D1C1F
Uncharacterized protein {ECO:0000313|EMBL:AHJ14359.1}; TaxID=1150621 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Sulfurospirillum.;" source="Sulfurospirillum multivorans DSM 12446.;"
hypothetical protein
04302015_24_scaffold_415_25
Sulfurospirillum multivorans, Sulfurospirillum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23371..24387)
DNA (1017bp) protein (339aa)
Transposase n=1 Tax=Campylobacter concisus UNSW3 RepID=U2EV59_9PROT rbh
Putative transposase {ECO:0000313|EMBL:AHJ14360.1}; TaxID=1150621 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Sulfurospirillum.;" source="Sulfurospirillum multivorans DSM 12446.;"
transposase rbh
04302015_24_scaffold_415_26
CG_Flavo_02, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24524..24745
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6X756_9RHOO
hypothetical protein
Tax=CG_Flavo_02
04302015_24_scaffold_415_27
Campylobacter coli, Campylobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

24765..24992
DNA (228bp) protein (76aa)
Uncharacterized protein n=6 Tax=Campylobacter RepID=H8ALL1_CAMJU
Uncharacterized protein {ECO:0000313|EMBL:AAY41938.1}; TaxID=195 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.;" source="Campylobacter coli.;"
hypothetical protein
04302015_24_scaffold_415_28
Helicobacter pullorum, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

24992..25711
DNA (720bp) protein (240aa)
Fic family protein n=4 Tax=Campylobacterales RepID=C5F2H4_9HELI
Fic family protein {ECO:0000313|EMBL:EEQ64467.1}; TaxID=537972 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter pullorum MIT 98-5489.;"
cell filamentation-like protein
04302015_24_scaffold_415_29
CG_Epsilon_02, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

25725..25880
DNA (156bp) protein (52aa)
Tax=CG_Epsilon_02
Displaying 29 items

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