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04302015_34_scaffold_18

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_18_1
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..229
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWI0_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ98755.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorp
hypothetical protein
04302015_34_scaffold_18_2
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(544..1785)
DNA (1242bp) protein (414aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase
argG; argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] rbh
Argininosuccinate synthase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=ASSY_HYPNA rbh
04302015_34_scaffold_18_3
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1961..3922
DNA (1962bp) protein (654aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWI2_HYPNA rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ98757.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorp
hypothetical protein rbh
04302015_34_scaffold_18_4
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3967..4308
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWI3_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ98758.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorp
hypothetical protein
04302015_34_scaffold_18_5
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4309..5358
DNA (1050bp) protein (350aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00054567}; EC=1.3.-.- {ECO:0000256|SAAS:SAAS00276934};; EC=1.3.5.2 {ECO:0000256|SAAS:SAAS00084821};; TaxID=1280954 species="Bacteria; Prote
pyrD; dihydroorotate oxidase (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] rbh
Dihydroorotate oxidase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWI4_HYPNA rbh
04302015_34_scaffold_18_6
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5355..6065)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWI5_HYPNA rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ98760.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorp
hypothetical protein rbh
04302015_34_scaffold_18_7
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6198..7298)
DNA (1101bp) protein (367aa)
Alcohol dehydrogenase, class III n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWI6_HYPNA rbh
Class III alcohol dehydrogenase {ECO:0000313|EMBL:KCZ98761.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas
class III alcohol dehydrogenase rbh
04302015_34_scaffold_18_8
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7384..7806)
DNA (423bp) protein (141aa)
DNA-binding protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWI7_HYPNA
DNA-binding protein {ECO:0000313|EMBL:KCZ98762.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha P
DNA-binding protein
04302015_34_scaffold_18_9
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7758..8228)
DNA (471bp) protein (157aa)
DNA-binding protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWI7_HYPNA
DNA-binding protein {ECO:0000313|EMBL:KCZ98762.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha P
DNA-binding protein
04302015_34_scaffold_18_10
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8272..8700
DNA (429bp) protein (143aa)
Putative membrane protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWI8_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ98763.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorp
hypothetical protein
04302015_34_scaffold_18_11
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8711..10297)
DNA (1587bp) protein (529aa)
alkaline phosphatase (EC:3.1.3.1); K01077 alkaline phosphatase [EC:3.1.3.1] rbh
Alkaline phosphatase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWI9_HYPNA rbh
Alkaline phosphatase {ECO:0000313|EMBL:KCZ98764.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha
04302015_34_scaffold_18_12
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10365..11297)
DNA (933bp) protein (311aa)
Putative transporter n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWJ0_HYPNA rbh
Putative transporter {ECO:0000313|EMBL:KCZ98765.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha
putative transporter rbh
04302015_34_scaffold_18_13
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11294..12139)
DNA (846bp) protein (282aa)
Glutamyl-Q tRNA(Asp) ligase {ECO:0000313|EMBL:KCZ98766.1}; EC=6.1.1.- {ECO:0000313|EMBL:KCZ98766.1};; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonada
glutamyl-Q tRNA(Asp) synthetase; K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] rbh
Aminoacyl-tRNA synthetase class I family protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWJ1_HYPNA rbh
04302015_34_scaffold_18_14
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12220..13281
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWJ2_HYPNA rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ98767.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorp
hypothetical protein rbh
04302015_34_scaffold_18_15
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13305..13955)
DNA (651bp) protein (217aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
msrA2; methionine-S-sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] rbh
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BWJ3_HYPNA rbh
04302015_34_scaffold_18_trna_1
unknown

Not on your lists

14074..14158
DNA (85bp)
transferRNA
04302015_34_scaffold_18_16
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14327..15592
DNA (1266bp) protein (422aa)
Conserved domain protein n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q166P6_ROSDO
hypothetical protein
Tax=BJP_08E140C01_Roseovarius_63_250
04302015_34_scaffold_18_17
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16210..16542
DNA (333bp) protein (111aa)
Putative transcriptional regulator, AbrB family n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KMQ1_RHISN
AbrB family transcriptional regulator
Putative transcriptional regulator, AbrB family {ECO:0000313|EMBL:ACP23666.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
04302015_34_scaffold_18_18
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16545..17036
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00037AB56D
Toxin with endonuclease activity YhaV {ECO:0000313|EMBL:KGM86188.1}; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Ros
hypothetical protein
04302015_34_scaffold_18_19
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17704..18030)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGY1_PARBH
Uncharacterized protein {ECO:0000313|EMBL:KCZ54678.1}; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringen
hypothetical protein
04302015_34_scaffold_18_20
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18034..18270)
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGY0_PARBH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KCZ63651.1}; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas atlantic
04302015_34_scaffold_18_21
Parvularcula bermudensis, Parvularcula, Parvularculales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18285..19517)
DNA (1233bp) protein (411aa)
Conjugal transfer protein trbI n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGX9_PARBH
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Conjugal transfer protein trbI {ECO:0000313|EMBL:ADM09219.1}; TaxID=314260 species="Bacteria; Proteobacteria; Alphaproteobacteria; Parvularculales; Parvularculaceae; Parvularcula.;" source="Parvularcu
04302015_34_scaffold_18_22
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19524..20510)
DNA (987bp) protein (329aa)
Conjugal transfer protein trbG n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGX8_PARBH rbh
Conjugative transfer protein TrbG {ECO:0000313|EMBL:KCZ47191.1}; TaxID=1280941 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomona
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9 rbh
04302015_34_scaffold_18_23
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20507..21205)
DNA (699bp) protein (233aa)
Conjugal transfer protein trbF n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGX7_PARBH rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KJS38677.1}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas s
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
04302015_34_scaffold_18_24
Parvularcula bermudensis, Parvularcula, Parvularculales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21209..22555)
DNA (1347bp) protein (449aa)
Putative conjugal transfer protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGX6_PARBH rbh
conjugal transfer protein; K07344 type IV secretion system protein TrbL rbh
Putative conjugal transfer protein {ECO:0000313|EMBL:ADM09216.1}; TaxID=314260 species="Bacteria; Proteobacteria; Alphaproteobacteria; Parvularculales; Parvularculaceae; Parvularcula.;" source="Parvul
04302015_34_scaffold_18_25
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22562..23257)
DNA (696bp) protein (232aa)
Possible conjugal transfer protein trbJ n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGX5_PARBH rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KJS38618.1}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas s
conjugal transfer protein trbJ rbh
04302015_34_scaffold_18_26
Hyphomonas sp. CY54-11-8, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23254..25734)
DNA (2481bp) protein (827aa)
Conjugal transfer protein trbe n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGX4_PARBH rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:KCZ48720.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas s
conjugal transfer protein Trbe; K03199 type IV secretion system protein VirB4 rbh
04302015_34_scaffold_18_27
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25728..25982)
DNA (255bp) protein (85aa)
Conjugal transfer protein n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XNW3_HIRBI
Conjugal transfer protein TrbD {ECO:0000313|EMBL:KCZ49302.1}; TaxID=1280941 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas s
conjugal transfer protein; K03198 type IV secretion system protein VirB3
04302015_34_scaffold_18_28
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25982..26317)
DNA (336bp) protein (112aa)
Conjugal transfer protein trbc n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGX2_PARBH
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KCZ52706.1}; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas b
conjugal transfer protein Trbc; K03197 type IV secretion system protein VirB2
04302015_34_scaffold_18_29
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26314..27309)
DNA (996bp) protein (332aa)
Conjugal transfer protein trbB n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGX1_PARBH rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KCZ63660.1}; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas a
conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11 rbh
Displaying items 1-30 of 50 in total

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