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04302015_34_scaffold_47

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_47_1
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1128
DNA (1128bp) protein (376aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182); K00748 lipid-A-disaccharide synthase [EC:2.4.1.182] rbh
Lipid-A-disaccharide synthase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C1A8_HYPNA rbh
Lipid-A-disaccharide synthase {ECO:0000313|EMBL:KCZ97721.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas po
04302015_34_scaffold_47_2
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1125..2429)
DNA (1305bp) protein (435aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rho
gltA; citrate synthase I (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] rbh
Citrate synthase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C1A7_HYPNA rbh
04302015_34_scaffold_47_3
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2478..3938)
DNA (1461bp) protein (487aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1280954 species="Bacteria; P
gltX1; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] rbh
Glutamate--tRNA ligase 1 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=SYE1_HYPNA rbh
04302015_34_scaffold_47_4
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4009..6123
DNA (2115bp) protein (705aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI000375FC2B rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ97717.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorp
ComEC/Rec2-like protein; K02238 competence protein ComEC
04302015_34_scaffold_47_5
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6104..6787)
DNA (684bp) protein (228aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1280954 species="Bacteria; Proteo
lexA; LexA repressor (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] rbh
LexA repressor n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=LEXA_HYPNA rbh
04302015_34_scaffold_47_6
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6868..7620)
DNA (753bp) protein (251aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:
trpC; indole-3-glycerol phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] rbh
Indole-3-glycerol phosphate synthase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=TRPC_HYPNA rbh
04302015_34_scaffold_47_7
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7624..8649)
DNA (1026bp) protein (342aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1280954 sp
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] rbh
Anthranilate phosphoribosyltransferase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=TRPD_HYPNA rbh
04302015_34_scaffold_47_8
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8646..9218)
DNA (573bp) protein (191aa)
trpG; anthranilate synthase component II (EC:4.1.3.27); K01658 anthranilate synthase component II [EC:4.1.3.27] rbh
Anthranilate synthase component II n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C1A0_HYPNA rbh
Anthranilate synthase component II {ECO:0000313|EMBL:KCZ97713.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomon
04302015_34_scaffold_47_9
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9215..10639)
DNA (1425bp) protein (475aa)
trpE; anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] rbh
Anthranilate synthase component I n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C199_HYPNA rbh
Anthranilate synthase component I {ECO:0000313|EMBL:KCZ97712.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomona
04302015_34_scaffold_47_10
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10636..12549)
DNA (1914bp) protein (638aa)
peptidylprolyl cis-trans isomerase-like protein; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] rbh
Peptidylprolyl cis-trans isomerase, homolog n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C198_HYPNA rbh
Peptidylprolyl cis-trans isomerase-like protein {ECO:0000313|EMBL:KCZ97711.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" sou
04302015_34_scaffold_47_11
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12638..13387
DNA (750bp) protein (250aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleB
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] rbh
Triosephosphate isomerase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=TPIS_HYPNA rbh
04302015_34_scaffold_47_12
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13468..13932
DNA (465bp) protein (155aa)
Preprotein translocase, SecG subunit n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C196_HYPNA
Preprotein translocase subunit SecG {ECO:0000313|EMBL:KCZ97709.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomo
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG
04302015_34_scaffold_47_13
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13996..15630
DNA (1635bp) protein (545aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_0
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] rbh
CTP synthase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=PYRG_HYPNA rbh
04302015_34_scaffold_47_14
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15652..16881)
DNA (1230bp) protein (410aa)
putative cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] rbh
Putative cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C194_HYPNA rbh
Putative cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:KCZ97707.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas
04302015_34_scaffold_47_15
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16878..17687)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C193_HYPNA rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ97706.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorp
hypothetical protein; K09701 hypothetical protein rbh
04302015_34_scaffold_47_16
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17684..19000)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C192_HYPNA rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ97705.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorp
hypothetical protein rbh
04302015_34_scaffold_47_17
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18997..20382)
DNA (1386bp) protein (462aa)
deoxyribodipyrimidine photolyase family protein; K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] rbh
Deoxyribodipyrimidine photolyase family protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C191_HYPNA rbh
Deoxyribodipyrimidine photolyase family protein {ECO:0000313|EMBL:KCZ97704.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" sou
04302015_34_scaffold_47_18
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20608..22068
DNA (1461bp) protein (487aa)
rfaE; rfaE bifunctional protein (EC:2.7.-.-); K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] rbh
Bifunctional protein HldE n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=HLDE_HYPNA rbh
Bifunctional protein HldE {ECO:0000256|HAMAP-Rule:MF_01603, ECO:0000256|SAAS:SAAS00015122}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyph
04302015_34_scaffold_47_19
Hyphomonas hirschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22085..22537)
DNA (453bp) protein (151aa)
Hemimethylated DNA binding domain protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C189_HYPNA
hemimethylated DNA binding domain-containing protein; K11940 heat shock protein HspQ
Hemimethylated DNA binding domain-containing protein {ECO:0000313|EMBL:KCZ95083.1}; TaxID=1280951 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;
04302015_34_scaffold_47_20
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22589..23695
DNA (1107bp) protein (369aa)
Ppx/GppA family phosphatase (EC:3.6.1.-); K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] rbh
Phosphatase, Ppx/GppA family n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C188_HYPNA rbh
Ppx/GppA family phosphatase {ECO:0000313|EMBL:KCZ97701.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas poly
04302015_34_scaffold_47_21
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23688..24392
DNA (705bp) protein (235aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547};
putative ribosomal RNA large subunit methyltransferase J; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] rbh
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RLME_HYPNA rbh
04302015_34_scaffold_47_22
Hyphomonas neptunium, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24447..24857
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C186_HYPNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI75982.1}; TaxID=228405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas neptunium
04302015_34_scaffold_47_23
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24931..26388
DNA (1458bp) protein (486aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] rbh
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C185_HYPNA rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:
04302015_34_scaffold_47_24
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26392..27009)
DNA (618bp) protein (206aa)
Acetyltransferase, GNAT family n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C184_HYPNA rbh
Acetyltransferase {ECO:0000313|EMBL:KCZ97696.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS7
acetyltransferase rbh
04302015_34_scaffold_47_25
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27084..28391
DNA (1308bp) protein (436aa)
NOL1/NOP2/sun domain-containing protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] rbh
NOL1/NOP2/sun domain protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C183_HYPNA rbh
NOL1/NOP2/sun domain-containing protein {ECO:0000313|EMBL:KCZ97695.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyp
04302015_34_scaffold_47_26
Hyphomonas neptunium, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28397..29473)
DNA (1077bp) protein (359aa)
beta-hydroxylase (EC:1.14.11.16) rbh
Beta-hydroxylase, aspartyl/asparaginyl family {ECO:0000313|EMBL:ABI75492.1}; EC=1.14.11.16 {ECO:0000313|EMBL:ABI75492.1};; TaxID=228405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobac
Beta-hydroxylase, aspartyl/asparaginyl family n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C182_HYPNA rbh
04302015_34_scaffold_47_27
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29562..31142
DNA (1581bp) protein (527aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
guaA; GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] rbh
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C181_HYPNA rbh
04302015_34_scaffold_47_28
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31437..32696
DNA (1260bp) protein (420aa)
Integrase {ECO:0000313|EMBL:KJS37789.1}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. BRH_c22.;"
phage integrase family protein id=12498573 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria
phage integrase
04302015_34_scaffold_47_29
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32770..34074)
DNA (1305bp) protein (435aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5I6_GEOUR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ27054.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniired
04302015_34_scaffold_47_30
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34096..35595)
DNA (1500bp) protein (500aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI0003735D80 rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ63644.1}; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas atlantic
hypothetical protein
Displaying items 1-30 of 32 in total

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