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04302015_34_scaffold_380

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_380_1
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..166
DNA (165bp) protein (55aa)
tuf1; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu
Elongation factor Tu 1 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=EFTU1_HYPNA
Elongation factor Tu {ECO:0000313|EMBL:KDA00364.1}; Flags: Fragment;; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyph
04302015_34_scaffold_380_2
Hyphomonas neptunium, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


507..827
DNA (321bp) protein (107aa)
30S ribosomal protein S10 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS10_HYPNA
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000255|HAMAP-Rule:MF_00508}; TaxID=228405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas nep
04302015_34_scaffold_380_3
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


827..1585
DNA (759bp) protein (253aa)
50S ribosomal protein L3 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL3_HYPNA rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hypho
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 rbh
04302015_34_scaffold_380_4
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1585..2229
DNA (645bp) protein (215aa)
50S ribosomal protein L4 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL4_HYPNA rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas pol
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 rbh
04302015_34_scaffold_380_5
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2229..2528
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL23_HYPNA
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas po
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
04302015_34_scaffold_380_6
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2547..3377
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL2_HYPNA rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas pol
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 rbh
04302015_34_scaffold_380_7
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3396..3674
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS19_HYPNA
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas po
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
04302015_34_scaffold_380_8
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3677..4066
DNA (390bp) protein (130aa)
50S ribosomal protein L22 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BYB9_HYPNA
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyph
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
04302015_34_scaffold_380_9
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4066..4803
DNA (738bp) protein (246aa)
30S ribosomal protein S3 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS3_HYPNA rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas pol
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 rbh
04302015_34_scaffold_380_10
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4807..5223
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL16_HYPNA
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyph
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
04302015_34_scaffold_380_11
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5226..5423
DNA (198bp) protein (66aa)
50S ribosomal protein L29 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL29_HYPNA
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas po
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
04302015_34_scaffold_380_12
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5434..5679
DNA (246bp) protein (82aa)
30S ribosomal protein S17 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS17_HYPNA
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas po
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
04302015_34_scaffold_380_13
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5676..6044
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL14_HYPNA
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyph
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
04302015_34_scaffold_380_14
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6047..6364
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL24_HYPNA
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas po
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
04302015_34_scaffold_380_15
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6357..6911
DNA (555bp) protein (185aa)
50S ribosomal protein L5 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BYC6_HYPNA rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas pol
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 rbh
04302015_34_scaffold_380_16
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6931..7236
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS14_HYPNA
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas po
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
04302015_34_scaffold_380_17
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7253..7648
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS8_HYPNA
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas pol
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
04302015_34_scaffold_380_18
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7661..8272
DNA (612bp) protein (204aa)
50S ribosomal protein L6 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL6_HYPNA rbh
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hypho
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 rbh
04302015_34_scaffold_380_19
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8241..8639
DNA (399bp) protein (133aa)
50S ribosomal protein L18 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL18_HYPNA
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas po
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
04302015_34_scaffold_380_20
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8653..9255
DNA (603bp) protein (201aa)
30S ribosomal protein S5 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS5_HYPNA rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hypho
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 rbh
04302015_34_scaffold_380_21
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9268..9453
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL30_HYPNA
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyph
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
04302015_34_scaffold_380_22
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9505..9984
DNA (480bp) protein (160aa)
50S ribosomal protein L15 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RL15_HYPNA
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyph
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
04302015_34_scaffold_380_23
Hyphomonas neptunium, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10074..11429
DNA (1356bp) protein (452aa)
Protein translocase subunit SecY n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BYD4_HYPNA rbh
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=228405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae
04302015_34_scaffold_380_24
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11426..11995
DNA (570bp) protein (190aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] rbh
Adenylate kinase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=KAD_HYPNA rbh
04302015_34_scaffold_380_25
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12146..12514
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS13_HYPNA
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas po
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
04302015_34_scaffold_380_26
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12530..12919
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RS11_HYPNA
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas po
04302015_34_scaffold_380_27
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12975..13457
DNA (483bp) protein (161aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=RPOA_HYPNA
Displaying 27 items

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