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04302015_34_scaffold_212

Search features with annotation key words

Displaying items 1-30 of 128 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_212_1
unknown

Not on your lists

comp(3..311)
DNA (309bp) protein (103aa)

This feature has no annotations

04302015_34_scaffold_212_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

691..1767
DNA (1077bp) protein (359aa)
Transcriptional regulator, AraC family (Fragment) n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RGZ7_9PROT
Bradyrhizobium elkanii strain UASWS1015 Contig187, whole genome shotgun sequence {ECO:0000313|EMBL:KIU43228.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
AraC family transcriptional regulator
04302015_34_scaffold_212_3
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2279..5257
DNA (2979bp) protein (993aa)
Collagen triple helix repeat protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FXP6_ACICJ rbh
triple helix repeat-containing collagen rbh
Collagen triple helix repeat protein {ECO:0000313|EMBL:ABQ30378.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Aci
04302015_34_scaffold_212_4
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5163..5846)
DNA (684bp) protein (228aa)
UPI0003CF4E7B related cluster n=2 Tax=unknown RepID=UPI0003CF4E7B
Transposase {ECO:0000313|EMBL:ESY79444.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.
transposase; K07497 putative transposase
04302015_34_scaffold_212_5
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6050..6595)
DNA (546bp) protein (182aa)
Putative integrase n=1 Tax=mine drainage metagenome RepID=E6QQ08_9ZZZZ
Shufflon-specific DNA recombinase {ECO:0000313|EMBL:GAJ28299.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomo
rci; integrase family protein
04302015_34_scaffold_212_6
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7037..7462
DNA (426bp) protein (142aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=A5G2I7_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ32069.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" sourc
04302015_34_scaffold_212_7
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7473..7916)
DNA (444bp) protein (148aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=F0J6F0_ACIMA
signal-transduction protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ82567.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium mul
04302015_34_scaffold_212_8
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8042..8935)
DNA (894bp) protein (298aa)
pyridoxal kinase (EC:2.7.1.35); K00868 pyridoxine kinase [EC:2.7.1.35]
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae
Pyridoxamine kinase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J6F1_ACIMA
04302015_34_scaffold_212_9
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9011..9385
DNA (375bp) protein (125aa)
Putative fluoride ion transporter CrcB n=3 Tax=Acidiphilium RepID=A5FV99_ACICJ
crcB; CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" sourc
04302015_34_scaffold_212_10
unknown

Not on your lists

9387..9542
DNA (156bp) protein (52aa)

This feature has no annotations

04302015_34_scaffold_212_11
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9621..11060)
DNA (1440bp) protein (480aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1043206 species="Bact
glycogen synthase; K00703 starch synthase [EC:2.4.1.21]
Glycogen synthase n=1 Tax=Acidiphilium sp. PM RepID=F7SAW3_9PROT
04302015_34_scaffold_212_12
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11115..12329)
DNA (1215bp) protein (405aa)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27); K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyr
Glucose-1-phosphate adenylyltransferase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J1C1_ACIMA
04302015_34_scaffold_212_13
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12449..14959)
DNA (2511bp) protein (837aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Ace
glgP; glycogen phosphorylase (EC:2.4.1.1); K00688 starch phosphorylase [EC:2.4.1.1]
Phosphorylase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J1C0_ACIMA
04302015_34_scaffold_212_14
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15116..16210)
DNA (1095bp) protein (365aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
metalloendopeptidase glycoprotease family (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J1B9_ACIMA
04302015_34_scaffold_212_15
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16234..17235
DNA (1002bp) protein (334aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAM
Porphobilinogen deaminase n=2 Tax=Acidiphilium RepID=F0J1B8_ACIMA
04302015_34_scaffold_212_16
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17248..17961
DNA (714bp) protein (238aa)
hemD; putative uroporphyrinogen III synthase (EC:4.2.1.75); K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Putative uroporphyrinogen III synthase HemD {ECO:0000313|EMBL:KDM67270.1}; EC=4.2.1.75 {ECO:0000313|EMBL:KDM67270.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospiril
Uroporphyrinogen III synthase HEM4 n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FUS3_ACICJ
04302015_34_scaffold_212_17
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17958..18536
DNA (579bp) protein (193aa)
Uncharacterized protein {ECO:0000313|EMBL:AKC85481.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxantho
04302015_34_scaffold_212_18
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18487..18858
DNA (372bp) protein (124aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=A5FUS2_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGO93715.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp
04302015_34_scaffold_212_19
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18858..20060
DNA (1203bp) protein (401aa)
HemY domain protein n=3 Tax=Acidiphilium RepID=A5FUS1_ACICJ
hypothetical protein; K02498 HemY protein
HemY domain protein {ECO:0000313|EMBL:ABQ29353.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="A
04302015_34_scaffold_212_20
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20178..21125)
DNA (948bp) protein (316aa)
Putative acyltransferase {ECO:0000313|EMBL:KDM67267.1}; EC=2.3.1.- {ECO:0000313|EMBL:KDM67267.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacterac
putative acyltransferase (EC:2.3.1.-)
Acyltransferase 3 n=2 Tax=Acidiphilium RepID=A5FUS0_ACICJ
04302015_34_scaffold_212_21
unknown

Not on your lists

21191..21565
DNA (375bp) protein (125aa)

This feature has no annotations

04302015_34_scaffold_212_22
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21523..21978
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z110_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKN00623.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX
CAAX amino terminal protease; K07052
04302015_34_scaffold_212_23
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22283..22510
DNA (228bp) protein (76aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=A5G208_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ31890.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cry
04302015_34_scaffold_212_24
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22513..23691
DNA (1179bp) protein (393aa)
radical SAM protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:
Dual-specificity RNA methyltransferase RlmN n=3 Tax=Acidiphilium RepID=RLMN_ACICJ
04302015_34_scaffold_212_25
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23656..24369)
DNA (714bp) protein (238aa)
DedA n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SKP1_RHOPH
DedA integral membrane protein
DedA {ECO:0000313|EMBL:CCG08556.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricu
04302015_34_scaffold_212_26
Komagataeibacter rhaeticus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24369..25109)
DNA (741bp) protein (247aa)
Putative uncharacterized protein n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S534_9PROT rbh
Glycosyl transferase family 2 {ECO:0000313|EMBL:KDU94983.1}; TaxID=1432055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komag
glycosyltransferase rbh
04302015_34_scaffold_212_27
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25116..25748)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FVG4_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ29596.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cry
04302015_34_scaffold_212_28
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25781..25984)
DNA (204bp) protein (68aa)
30S ribosomal protein S21 n=4 Tax=Acetobacteraceae RepID=RS21_ACICJ
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Ac
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
04302015_34_scaffold_212_29
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26217..27254)
DNA (1038bp) protein (346aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA {ECO:0000255|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000255|HAMAP-Rule:MF_00144};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillal
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=MNMA_ACICJ
04302015_34_scaffold_212_30
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27279..27611)
DNA (333bp) protein (111aa)
Ferredoxin n=3 Tax=Acidiphilium RepID=A5FZD6_ACICJ
ferredoxin; K04755 ferredoxin, 2Fe-2S
2Fe-2S ferredoxin FdxB {ECO:0000313|EMBL:KDM66685.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp.
Displaying items 1-30 of 128 in total

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