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04302015_34_scaffold_215

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Displaying items 1-30 of 75 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_215_1
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..211
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V519_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53049.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
04302015_34_scaffold_215_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(284..1492)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=2 Tax=Afipia RepID=K8NJC4_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:KIZ41301.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
hypothetical protein
04302015_34_scaffold_215_3
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1501..3462)
DNA (1962bp) protein (654aa)
Pseudomurein-binding repeat protein n=2 Tax=Afipia RepID=D6V116_9BRAD rbh
DEAD/DEAH box helicase {ECO:0000313|EMBL:KHJ55198.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis
hypothetical protein
04302015_34_scaffold_215_4
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3514..4539)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Gluconacetobacter europaeus RepID=UPI000374390D rbh
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
04302015_34_scaffold_215_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4542..7262)
DNA (2721bp) protein (907aa)
DNA modification methyltransferase-related protein n=2 Tax=Afipia RepID=D6V118_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30404.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
type II restriction enzyme methylase subunit
04302015_34_scaffold_215_6

Not on your lists

comp(7303..7632)
DNA (330bp) protein (110aa)
XRE family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FAEE
Putative plasmid maintenance system antidote protein {ECO:0000313|EMBL:BAF30451.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
plasmid maintenance system antidote protein
04302015_34_scaffold_215_7
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7645..7920)
DNA (276bp) protein (92aa)
plasmid maintenance system killer n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FAED
plasmid maintenance system killer protein; K07334 proteic killer suppression protein
Plasmid maintenance system killer {ECO:0000313|EMBL:ABC23575.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rho
04302015_34_scaffold_215_8

Not on your lists

8199..8495
DNA (297bp) protein (99aa)
transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI00035FA50D
Uncharacterized protein {ECO:0000313|EMBL:KKN45435.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
prophage CP4-57 regulatory
04302015_34_scaffold_215_9
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8449..9705)
DNA (1257bp) protein (419aa)
integrase n=1 Tax=Afipia birgiae RepID=UPI0002EFC3FA rbh
integrase
Integrase {ECO:0000313|EMBL:EAT09433.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA5
04302015_34_scaffold_215_10
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9997..11559)
DNA (1563bp) protein (521aa)
guaA; GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
GMP synthase [glutamine-hydrolyzing] n=3 Tax=Acidiphilium RepID=A5FWY6_ACICJ
04302015_34_scaffold_215_11
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11617..12282)
DNA (666bp) protein (222aa)
putative dienelactone hydrolase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] rbh
Carboxymethylenebutenolidase {ECO:0000313|EMBL:ABQ30119.1}; EC=3.1.1.45 {ECO:0000313|EMBL:ABQ30119.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobact
Carboxymethylenebutenolidase n=2 Tax=Acidiphilium RepID=A5FWY7_ACICJ rbh
04302015_34_scaffold_215_12
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12285..12791)
DNA (507bp) protein (169aa)
rppH; RNA pyrophosphohydrolase (EC:3.6.1.-); K08311 putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=1043206 speci
RNA pyrophosphohydrolase n=3 Tax=Acidiphilium RepID=RPPH_ACICJ
04302015_34_scaffold_215_13
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12788..13738)
DNA (951bp) protein (317aa)
Putative uncharacterized protein n=1 Tax=Acidiphilium sp. PM RepID=F7SAD4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGO93890.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp
hypothetical protein
04302015_34_scaffold_215_14
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13827..15197)
DNA (1371bp) protein (457aa)
ctpA; carboxyl-terminal protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
Carboxyl-terminal protease {ECO:0000313|EMBL:ABQ30122.1}; EC=3.4.21.102 {ECO:0000313|EMBL:ABQ30122.1};; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospi
Carboxyl-terminal protease n=3 Tax=Acidiphilium RepID=F0J675_ACIMA
04302015_34_scaffold_215_15
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15389..16609)
DNA (1221bp) protein (407aa)
Putative peptidase M23B n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J674_ACIMA
Peptidase M23B {ECO:0000313|EMBL:KDM67670.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1
putative peptidase M23B
04302015_34_scaffold_215_16
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16584..18125)
DNA (1542bp) protein (514aa)
gpmI; phosphoglycerate mutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=2 Tax=Acidiphilium RepID=F0J673_ACIMA
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosp
04302015_34_scaffold_215_17
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18161..18781)
DNA (621bp) protein (207aa)
lidL; putative Beta-lactamase (EC:3.5.2.6)
Uncharacterized protein n=6 Tax=Legionella pneumophila RepID=Q5X5Z6_LEGPA
Putative beta-lactamase HcpC {ECO:0000313|EMBL:GAN23267.1}; Flags: Precursor;; TaxID=446 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Le
04302015_34_scaffold_215_18
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18778..19239)
DNA (462bp) protein (154aa)
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=RLMH_ACICJ
04302015_34_scaffold_215_19

Not on your lists

comp(19255..19578)
DNA (324bp) protein (108aa)
Iojap-like protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T1DHI8_9ZZZZ
Iojap-like protein {ECO:0000313|EMBL:EQD80784.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein; K09710 ribosome-associated protein
04302015_34_scaffold_215_20
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19785..20381)
DNA (597bp) protein (199aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244};
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z1X5_9PROT
04302015_34_scaffold_215_21
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20405..21748)
DNA (1344bp) protein (448aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] rbh
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:000
Gamma-glutamyl phosphate reductase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZGF9_GLUDA rbh
04302015_34_scaffold_215_22
Pseudomonas sp. FeS53a, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21798..22328
DNA (531bp) protein (177aa)
adenylylsulfate kinase n=1 Tax=Pseudomonas tolaasii RepID=UPI0002F52CB1
Uncharacterized protein {ECO:0000313|EMBL:KIV72210.1}; TaxID=1604022 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. F
hypothetical protein
04302015_34_scaffold_215_23
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22442..23440
DNA (999bp) protein (333aa)
Putative hydrolase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IYT0_ACIMA
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAJ80940.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivor
04302015_34_scaffold_215_24
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23450..24211
DNA (762bp) protein (254aa)
Molybdopterin binding domain-containing protein n=1 Tax=Acidiphilium sp. PM RepID=F7S7A4_9PROT
molybdopterin binding domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:KDM65218.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp
04302015_34_scaffold_215_25
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24238..24654)
DNA (417bp) protein (139aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
AspS {ECO:0000313|EMBL:EGO95329.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EGO95329.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;
Aspartate--tRNA ligase n=1 Tax=Acidiphilium sp. PM RepID=F7S684_9PROT
Suspect SCG annotation. See neighboring gene [04302015_34_scaffold_215_26].
04302015_34_scaffold_215_26
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24698..25936)
DNA (1239bp) protein (413aa)
Aspartate--tRNA ligase AspS {ECO:0000313|EMBL:KDM65271.1}; EC=6.1.1.12 {ECO:0000313|EMBL:KDM65271.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobact
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
Aspartate--tRNA ligase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J391_ACIMA
04302015_34_scaffold_215_27
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26020..27195
DNA (1176bp) protein (392aa)
rnd; ribonuclease D (EC:3.1.13.5); K03684 ribonuclease D [EC:3.1.13.5]
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=926570 species="Bacteria; Proteobacteria; Alph
Ribonuclease D n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J392_ACIMA
04302015_34_scaffold_215_28
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27221..27943)
DNA (723bp) protein (241aa)
acetoacetyl-CoA reductase; K00023 acetoacetyl-CoA reductase [EC:1.1.1.36] rbh
Acetoacetyl-CoA reductase PhbB {ECO:0000313|EMBL:KDM66033.1}; EC=1.1.1.36 {ECO:0000313|EMBL:KDM66033.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetob
3-oxoacyl-[acyl-carrier-protein] reductase n=3 Tax=Acidiphilium RepID=A5G262_ACICJ rbh
04302015_34_scaffold_215_29
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28062..30134)
DNA (2073bp) protein (691aa)
N-acetylmuramic acid 6-phosphate etherase MurQ {ECO:0000313|EMBL:KDM66293.1}; EC=4.2.1.126 {ECO:0000313|EMBL:KDM66293.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodosp
nagA_murQ; N-acetylglucosamine-6-phosphate deacetylase/N-acetylmuramic acid 6-phosphate etherase (EC:3.5.1.25 4.2.-.-)
N-acetylglucosamine-6-phosphate deacetylase/N-acetylmuramic acid 6-phosphate etherase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IYF4_ACIMA
04302015_34_scaffold_215_30
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30141..30551)
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=F0IYF3_ACIMA
hypothetical protein
Histidine triad (HIT) protein {ECO:0000313|EMBL:EGO95108.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphil
Displaying items 1-30 of 75 in total

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