ggKbase home page

04302015_34_scaffold_355

Search features with annotation key words

Displaying items 1-30 of 78 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_355_1
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(796..2613)
DNA (1818bp) protein (606aa)
Chaperone protein HtpG n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G343_ACICJ
heat shock protein 90; K04079 molecular chaperone HtpG
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=349163 species=
04302015_34_scaffold_355_2
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2677..5103
DNA (2427bp) protein (809aa)
Helicase domain protein n=2 Tax=Acidiphilium RepID=A5G344_ACICJ
hypothetical protein
Superfamily II DNA and RNA helicase {ECO:0000313|EMBL:KDM68532.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Aci
04302015_34_scaffold_355_3
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5195..5491
DNA (297bp) protein (99aa)
Heat shock protein Hsp15 n=2 Tax=Acidiphilium RepID=A5G345_ACICJ
RNA-binding protein; K04762 ribosome-associated heat shock protein Hsp15
Heat shock protein Hsp15 {ECO:0000313|EMBL:ABQ32277.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cr
04302015_34_scaffold_355_4
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5594..5923
DNA (330bp) protein (110aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein n=3 Tax=Acidiphilium RepID=A5G346_ACICJ
4Fe-4S ferredoxin; K05524 ferredoxin
Ferredoxin {ECO:0000313|EMBL:BAJ82782.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (stra
04302015_34_scaffold_355_5
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6039..6956
DNA (918bp) protein (306aa)
CarD family transcriptional regulator n=1 Tax=Acidiphilium sp. PM RepID=F7S1X3_9PROT
CarD family transcriptional regulator {ECO:0000313|EMBL:EGO96840.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="A
carD family transcriptional regulator; K07736 CarD family transcriptional regulator
04302015_34_scaffold_355_6
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7067..7447
DNA (381bp) protein (127aa)
Flagellar basal body protein-like protein n=2 Tax=Acidiphilium RepID=A5G0F1_ACICJ
flagellar basal body protein-like protein; K02387 flagellar basal-body rod protein FlgB
Flagellar basal body protein-like protein {ECO:0000313|EMBL:ABQ31333.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source
04302015_34_scaffold_355_7
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7513..7917
DNA (405bp) protein (135aa)
Flagellar basal-body rod protein FlgC n=3 Tax=Acidiphilium RepID=A5G0F0_ACICJ
flgC; flagellar basal-body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source=
04302015_34_scaffold_355_8
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7917..8222
DNA (306bp) protein (102aa)
Flagellar hook-basal body complex protein FliE n=3 Tax=Acidiphilium RepID=A5G0E9_ACICJ
flagellar hook-basal body complex protein FliE; K02408 flagellar hook-basal body complex protein FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
04302015_34_scaffold_355_9
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8228..8488
DNA (261bp) protein (87aa)
Export protein FliQ, family 3 n=3 Tax=Acidiphilium RepID=A5G0E8_ACICJ
export protein FliQ; K02420 flagellar biosynthetic protein FliQ
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:BAJ81723.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acid
04302015_34_scaffold_355_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8500..9012
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037ED473
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="B
flagellar biosynthetic protein FliR; K02421 flagellar biosynthetic protein FliR
04302015_34_scaffold_355_11
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8982..9203
DNA (222bp) protein (74aa)
Type III secretion system inner membrane R protein n=3 Tax=Acidiphilium RepID=A5G0E7_ACICJ
fliR; flagellar biosynthetic protein FliR; K02421 flagellar biosynthetic protein FliR
Type III secretion system inner membrane R protein {ECO:0000313|EMBL:ABQ31329.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.
04302015_34_scaffold_355_12
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9210..10292
DNA (1083bp) protein (361aa)
flagellar biosynthetic protein FlhB n=1 Tax=Gluconobacter frateurii RepID=UPI00029AE771
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:AHK71530.1}; TaxID=1288313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gl
flagellar biosynthetic protein FlhB; K02401 flagellar biosynthetic protein FlhB
04302015_34_scaffold_355_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10419..11267
DNA (849bp) protein (283aa)
dapAb; dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
dihydrodipicolinate synthetase n=1 Tax=Rhizobium mongolense RepID=UPI0003B44F0B
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:KGD96421.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
04302015_34_scaffold_355_14
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11247..11858)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003735A59
Uncharacterized protein {ECO:0000313|EMBL:EKS40047.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
04302015_34_scaffold_355_15
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11971..12393)
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=A5G277_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ82446.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium mul
04302015_34_scaffold_355_16
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12536..14206
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1043206 sp
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3]
Formate--tetrahydrofolate ligase n=1 Tax=Acidiphilium sp. PM RepID=F7S676_9PROT
04302015_34_scaffold_355_17
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14203..17151)
DNA (2949bp) protein (983aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1120923 species="Bacteria; Proteobacteria; Al
ribonuclease; K08300 ribonuclease E [EC:3.1.26.12]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000369939D rbh
04302015_34_scaffold_355_18
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17579..21052)
DNA (3474bp) protein (1158aa)
Fucolectin tachylectin-4 pentraxin-1 n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FVH9_ACICJ rbh
fucolectin tachylectin-4 pentraxin-1 rbh
Fucolectin tachylectin-4 pentraxin-1 {ECO:0000313|EMBL:ABQ29611.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Aci
04302015_34_scaffold_355_19
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21095..21973)
DNA (879bp) protein (293aa)
Uncharacterized protein {ECO:0000313|EMBL:AIO32076.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
04302015_34_scaffold_355_20
Acetobacter pomorum, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21973..23298)
DNA (1326bp) protein (442aa)
Putative uncharacterized protein n=1 Tax=Acetobacter pomorum DM001 RepID=F1YSZ0_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EGE48014.1}; TaxID=945681 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter pomor
fucolectin tachylectin-4 pentraxin-1 rbh
04302015_34_scaffold_355_21
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23315..24127)
DNA (813bp) protein (271aa)
Methyltransferase FkbM n=2 Tax=Ketogulonicigenium vulgare RepID=F9Y547_KETVW
Methyltransferase FkbM
Uncharacterized protein {ECO:0000313|EMBL:ADO42480.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonic
04302015_34_scaffold_355_22
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24197..25993
DNA (1797bp) protein (599aa)
Putative enzyme involved in methoxymalonyl-ACP biosynthesis n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y080_9PROT rbh
Putative enzyme involved in methoxymalonyl-ACP biosynthesis {ECO:0000313|EMBL:EGY01071.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Ni
FkbH-like protein rbh
04302015_34_scaffold_355_23
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25990..26235
DNA (246bp) protein (82aa)
Acyl carrier protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HMC4_PSEST
Acyl carrier protein {ECO:0000313|EMBL:KJH82313.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Ps
acyl carrier protein; K02078 acyl carrier protein
04302015_34_scaffold_355_24
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26232..26519)
DNA (288bp) protein (96aa)
phhB; pterin-4-alpha-carbinolamine dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetra
Putative pterin-4-alpha-carbinolamine dehydratase n=3 Tax=Acidiphilium RepID=PHS_ACICJ
04302015_34_scaffold_355_25
unknown

Not on your lists

comp(26534..26989)
DNA (456bp) protein (152aa)

This feature has no annotations

04302015_34_scaffold_355_26
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26986..27177)
DNA (192bp) protein (64aa)
glutathione S-transferase family protein; K04097 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase, N-terminal domain protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FWQ0_ACICJ
Glutathione S-transferase {ECO:0000313|EMBL:GAN77737.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera
04302015_34_scaffold_355_27
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27174..27614)
DNA (441bp) protein (147aa)
glutathione S-transferase domain-containing protein; K04097 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase, N-terminal domain protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FWQ0_ACICJ
Glutathione S-transferase, N-terminal domain protein {ECO:0000313|EMBL:ABQ30032.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphiliu
04302015_34_scaffold_355_28
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27624..28508)
DNA (885bp) protein (295aa)
Alpha/beta hydrolase domain-containing protein n=1 Tax=Acidiphilium sp. PM RepID=F7S2I4_9PROT
alpha/beta hydrolase domain-containing protein
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:ABQ30033.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" sourc
04302015_34_scaffold_355_29
unknown

Not on your lists

28686..28991
DNA (306bp) protein (102aa)

This feature has no annotations

04302015_34_scaffold_355_30
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29047..29850
DNA (804bp) protein (268aa)
Dihydropteroate synthase FolP {ECO:0000313|EMBL:KDM67407.1}; EC=2.5.1.15 {ECO:0000313|EMBL:KDM67407.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetoba
dihydropteroate synthase (EC:2.5.1.15); K00796 dihydropteroate synthase [EC:2.5.1.15]
Dihydropteroate synthase n=2 Tax=Acidiphilium RepID=A5FWQ3_ACICJ
Displaying items 1-30 of 78 in total

View Taxonomy