ggKbase home page

04302015_34_scaffold_1123

Search features with annotation key words

Displaying items 1-30 of 35 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_1123_trna_1
unknown

Not on your lists

comp(9..82)
DNA (74bp)
transferRNA
04302015_34_scaffold_1123_1
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(174..1184)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Alishewanella agri BL06 RepID=I9P5Z1_9ALTE rbh
Uncharacterized protein {ECO:0000313|EMBL:EIW90447.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella a
hypothetical protein
04302015_34_scaffold_1123_2
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1156..2577)
DNA (1422bp) protein (474aa)
MATE efflux family protein n=1 Tax=Alishewanella agri BL06 RepID=I8UEL8_9ALTE rbh
MATE efflux family protein {ECO:0000313|EMBL:EIW90448.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanell
MATE efflux family protein; K03327 multidrug resistance protein, MATE family rbh
04302015_34_scaffold_1123_3
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2592..3215
DNA (624bp) protein (208aa)
Riboflavin synthase subunit alpha n=1 Tax=Alishewanella agri BL06 RepID=I9P6E0_9ALTE rbh
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:EIW90449.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alish
riboflavin synthase subunit alpha
04302015_34_scaffold_1123_4
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3212..3412)
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Alishewanella RepID=I9DW77_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:EIW90450.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella a
hypothetical protein
04302015_34_scaffold_1123_5
Alishewanella aestuarii, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3433..4293)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Alishewanella aestuarii B11 RepID=J2IA34_9ALTE rbh
Uncharacterized protein {ECO:0000313|EMBL:EJI83927.1}; TaxID=1197174 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella a
hypothetical protein rbh
04302015_34_scaffold_1123_6
Alishewanella jeotgali, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4585..6501
DNA (1917bp) protein (639aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
thrS; threonyl-tRNA ligase (EC:6.1.1.3) rbh
Threonine--tRNA ligase n=1 Tax=Alishewanella jeotgali KCTC 22429 RepID=H3ZAR1_9ALTE rbh
04302015_34_scaffold_1123_7
Alishewanella jeotgali, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6738..6962
DNA (225bp) protein (75aa)
Translation initiation factor IF-3 n=1 Tax=Alishewanella aestuarii B11 RepID=J2IA38_9ALTE
Translation initiation factor IF-3 {ECO:0000313|EMBL:EHR42024.1}; TaxID=1129374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alis
infC; translation initiation factor IF-3
04302015_34_scaffold_1123_8
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7133..7330
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=Alishewanella RepID=H3ZAQ9_9ALTE
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Ali
50S ribosomal protein L35
04302015_34_scaffold_1123_9
Alishewanella aestuarii, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7348..7704
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=2 Tax=Alishewanella RepID=I9P5Z8_9ALTE
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1197174 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Ali
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
04302015_34_scaffold_1123_10
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7808..8932)
DNA (1125bp) protein (375aa)
Heat shock protein n=1 Tax=Alishewanella agri BL06 RepID=I8UEM7_9ALTE rbh
Heat shock protein {ECO:0000313|EMBL:EIW90458.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella agri B
heat shock protein
04302015_34_scaffold_1123_11
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8996..9874)
DNA (879bp) protein (293aa)
Alpha/beta hydrolase fold protein n=1 Tax=Alishewanella agri BL06 RepID=I9P6E9_9ALTE rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EIW90459.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alish
alpha/beta hydrolase fold protein
04302015_34_scaffold_1123_12
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9902..10528)
DNA (627bp) protein (209aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {
upp; uracil phosphoribosyltransferase; K00761 uracil phosphoribosyltransferase [EC:2.4.2.9]
Uracil phosphoribosyltransferase n=1 Tax=Alishewanella agri BL06 RepID=I9DW86_9ALTE rbh
04302015_34_scaffold_1123_13
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10752..11399
DNA (648bp) protein (216aa)
TetR family transcriptional regulator n=1 Tax=Alishewanella agri BL06 RepID=I8UB17_9ALTE rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:EIW90461.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="A
TetR family transcriptional regulator
04302015_34_scaffold_1123_14
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11418..13733
DNA (2316bp) protein (772aa)
Acyl-CoA dehydrogenase n=1 Tax=Alishewanella agri BL06 RepID=I9P602_9ALTE rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EIW90462.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella ag
acyl-CoA dehydrogenase rbh
04302015_34_scaffold_1123_15
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13861..14328
DNA (468bp) protein (156aa)
N-acetyltransferase GCN5 n=1 Tax=Alishewanella agri BL06 RepID=I8UEN1_9ALTE rbh
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EIW90463.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella
N-acetyltransferase GCN5
04302015_34_scaffold_1123_16
Alishewanella aestuarii, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14329..14550
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Alishewanella aestuarii B11 RepID=J1Y8A0_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:EJI83940.1}; TaxID=1197174 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella a
04302015_34_scaffold_1123_17
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14613..14729)
DNA (117bp) protein (39aa)
Glu/Leu/Phe/Val dehydrogenase, dimerization region n=1 Tax=Alishewanella agri BL06 RepID=I9DW88_9ALTE
Glu/Leu/Phe/Val dehydrogenase, dimerization region {ECO:0000313|EMBL:EIW90465.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella
04302015_34_scaffold_1123_18
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14755..15747)
DNA (993bp) protein (331aa)
Glu/Leu/Phe/Val dehydrogenase, dimerisation region; K00263 leucine dehydrogenase [EC:1.4.1.9] rbh
Glu/Leu/Phe/Val dehydrogenase, dimerization region n=1 Tax=Alishewanella agri BL06 RepID=I9DW88_9ALTE rbh
Glu/Leu/Phe/Val dehydrogenase, dimerization region {ECO:0000313|EMBL:EIW90465.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella
04302015_34_scaffold_1123_19
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15858..16286
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Alishewanella agri BL06 RepID=I8UB22_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:EIW90466.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella a
hypothetical protein
04302015_34_scaffold_1123_20
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16357..17511)
DNA (1155bp) protein (385aa)
RmlC-like domain-containing protein n=1 Tax=Alishewanella agri BL06 RepID=I9P606_9ALTE rbh
RmlC-like domain-containing protein {ECO:0000313|EMBL:EIW90467.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Ali
RmlC-like domain-containing protein rbh
04302015_34_scaffold_1123_21
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17675..19045)
DNA (1371bp) protein (457aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
purB; adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2] rbh
Adenylosuccinate lyase n=1 Tax=Alishewanella agri BL06 RepID=I8UEN4_9ALTE rbh
04302015_34_scaffold_1123_22
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19060..19692)
DNA (633bp) protein (211aa)
High frequency lysogenization protein HflD homolog n=1 Tax=Alishewanella agri BL06 RepID=I9P6F7_9ALTE rbh
High frequency lysogenization protein HflD homolog {ECO:0000256|HAMAP-Rule:MF_00695}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewan
hflD; hypothetical protein; K07153 high frequency lysogenization protein
04302015_34_scaffold_1123_23
Alishewanella jeotgali, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19694..20797)
DNA (1104bp) protein (368aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1129374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadal
mnmA; tRNA-specific 2-thiouridylase MnmA; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] rbh
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Alishewanella jeotgali KCTC 22429 RepID=H3ZAP5_9ALTE rbh
04302015_34_scaffold_1123_24
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20907..21362)
DNA (456bp) protein (152aa)
MutT/nudix family protein n=1 Tax=Alishewanella agri BL06 RepID=I8UB26_9ALTE rbh
MutT/nudix family protein {ECO:0000313|EMBL:EIW90471.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella
MutT/nudix family protein
04302015_34_scaffold_1123_25
Alishewanella aestuarii, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21401..22021)
DNA (621bp) protein (207aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1197174 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonad
pseudouridine synthase; K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
Pseudouridine synthase n=1 Tax=Alishewanella aestuarii B11 RepID=J1PZ02_9ALTE rbh
04302015_34_scaffold_1123_26
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22242..22427
DNA (186bp) protein (62aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:EIW90473.1}; EC=1.1.1.42 {ECO:0000313|EMBL:EIW90473.1};; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadac
icd; isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase, NADP-dependent n=1 Tax=Alishewanella jeotgali KCTC 22429 RepID=H3ZAP2_9ALTE
04302015_34_scaffold_1123_27
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22366..24474
DNA (2109bp) protein (703aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:EIW90473.1}; EC=1.1.1.42 {ECO:0000313|EMBL:EIW90473.1};; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadac
isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase n=1 Tax=Alishewanella agri BL06 RepID=I8UEN9_9ALTE rbh
04302015_34_scaffold_1123_28
Alishewanella aestuarii, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24615..24830)
DNA (216bp) protein (72aa)
Cold-shock DNA-binding domain-containing protein n=3 Tax=Alishewanella RepID=H3ZAP1_9ALTE
Cold-shock DNA-binding domain-containing protein {ECO:0000313|EMBL:EJI83951.1}; TaxID=1197174 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;
cspD; putative cold shock protein CspD
04302015_34_scaffold_1123_29
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25030..25350
DNA (321bp) protein (107aa)
ATP-dependent Clp protease adapter protein ClpS n=3 Tax=Alishewanella RepID=H3ZAP0_9ALTE
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanell
ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS
Displaying items 1-30 of 35 in total

View Taxonomy