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04302015_34_scaffold_4316

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_4316_1

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2..1381
DNA (1380bp) protein (460aa)
Integral membrane protein MviN n=1 Tax=mine drainage metagenome RepID=T0YZI1_9ZZZZ rbh
Integral membrane protein MviN {ECO:0000313|EMBL:EQD37362.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
integral membrane protein MviN; K03980 virulence factor
04302015_34_scaffold_4316_2
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1404..2339)
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X3_NITMU rbh
transcriptional regulator CysB-like protein; K13634 LysR family transcriptional regulator, cys regulon transcriptional activator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABB74448.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="N
04302015_34_scaffold_4316_3
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2449..3222
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Cellvibrio sp. BR RepID=I3IFQ1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIK46886.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio sp. BR.
sulfite exporter TauE/SafE; K07090
04302015_34_scaffold_4316_4
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

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3351..4517
DNA (1167bp) protein (389aa)
ATPase (AAA+ superfamily)-like protein n=1 Tax=Thauera sp. 28 RepID=N6ZIC4_9RHOO rbh
ATPase (AAA+ superfamily)-like protein; K07133 rbh
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
04302015_34_scaffold_4316_5
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4774..6012
DNA (1239bp) protein (413aa)
Predicted ATPase (AAA+ superfamily) n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P6P8_AROAE
ATPase {ECO:0000313|EMBL:CDM22483.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;
ATPase; K07133
04302015_34_scaffold_4316_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6119..6388
DNA (270bp) protein (90aa)
ribF; riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1246301 species="Bacteria; Proteobacte
Riboflavin biosynthesis protein RibF n=1 Tax=Variovorax paradoxus B4 RepID=T1X7J4_VARPD
04302015_34_scaffold_4316_7
Grimontia hollisae, Grimontia, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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6363..7004
DNA (642bp) protein (214aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=675812 species="Bacteria; Proteobacter
riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I810_GRIHO
04302015_34_scaffold_4316_8
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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7001..7756
DNA (756bp) protein (252aa)
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
Isoleucine--tRNA ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAI9_9PROT
04302015_34_scaffold_4316_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7731..8351
DNA (621bp) protein (207aa)
isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003641A56
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
04302015_34_scaffold_4316_10
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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8296..8856
DNA (561bp) protein (187aa)
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAI9_9PROT
Tax=GWA2_Gallionellales_60_18_curated
04302015_34_scaffold_4316_11
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8822..9727
DNA (906bp) protein (302aa)
ileS; isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
Isoleucine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02002}; EC=6.1.1.5 {ECO:0000255|HAMAP-Rule:MF_02002};; Isoleucyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02002}; Short=IleRS {ECO:0000255|HAMAP-Ru
Isoleucine--tRNA ligase n=1 Tax=Ralstonia pickettii (strain 12J) RepID=SYI_RALPJ
04302015_34_scaffold_4316_12

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9720..10190
DNA (471bp) protein (157aa)
Peptidase A8, signal peptidase II {ECO:0000313|EMBL:EQD34514.1}; EC=3.4.23.36 {ECO:0000313|EMBL:EQD34514.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" sourc
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36]
Peptidase A8, signal peptidase II n=1 Tax=mine drainage metagenome RepID=T1A0A2_9ZZZZ
04302015_34_scaffold_4316_13

Not on your lists

10841..11245
DNA (405bp) protein (135aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=mine drainage metagenome RepID=T0ZX76_9ZZZZ
Hydroxymethylbutenyl pyrophosphate reductase {ECO:0000313|EMBL:EQD34515.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying 13 items

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