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04302015_34_scaffold_1267

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Displaying items 1-30 of 51 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_34_scaffold_1267_1
Candidatus Methylopumilus planktonicus, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3..98
DNA (96bp) protein (32aa)
Elongation factor Tu n=2 Tax=Nitrosospira RepID=EFTU_NITMU
translation elongation factor Tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1581557 species="Bacteria; Proteobacteria; Betaproteobacter
04302015_34_scaffold_1267_2

Not on your lists


108..428
DNA (321bp) protein (107aa)
Ribosomal protein S10, bacterial n=1 Tax=mine drainage metagenome RepID=T0ZL53_9ZZZZ
Ribosomal protein S10, bacterial {ECO:0000313|EMBL:EQD30545.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
04302015_34_scaffold_1267_3

Not on your lists


534..1178
DNA (645bp) protein (215aa)
50S ribosomal subunit protein L3 n=1 Tax=mine drainage metagenome RepID=T0ZPB7_9ZZZZ rbh
50S ribosomal subunit protein L3 {ECO:0000313|EMBL:EQD30544.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L3, bacterial; K02906 large subunit ribosomal protein L3 rbh
04302015_34_scaffold_1267_4

Not on your lists


1180..1800
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=mine drainage metagenome RepID=T0YBQ1_9ZZZZ rbh
50S ribosomal protein L4 {ECO:0000313|EMBL:EQD30543.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rplD; 50S ribosomal protein L4
04302015_34_scaffold_1267_5
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1797..2105
DNA (309bp) protein (103aa)
50S ribosomal protein L23 n=1 Tax=mine drainage metagenome RepID=T0YFA4_9ZZZZ
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
Tax=CG_Hydro_01
04302015_34_scaffold_1267_6
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2109..2936
DNA (828bp) protein (276aa)
50S ribosomal protein L2 id=1820687 bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small rbh
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
Tax=RBG_16_Gallionellales_57_15_curated
04302015_34_scaffold_1267_7
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2948..3232
DNA (285bp) protein (95aa)
30S ribosomal protein S19 n=4 Tax=Proteobacteria RepID=D9Y507_9BURK
rpsS; RpsS; K02965 small subunit ribosomal protein S19
Tax=CG_Hydro_01
04302015_34_scaffold_1267_8

Not on your lists


3246..3581
DNA (336bp) protein (112aa)
Ribosomal protein L22, bacterial-type n=1 Tax=mine drainage metagenome RepID=T1D1P9_9ZZZZ
Ribosomal protein L22, bacterial-type {ECO:0000313|EMBL:EQD75399.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
04302015_34_scaffold_1267_9
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3584..4309
DNA (726bp) protein (242aa)
30S ribosomal protein S3 n=2 Tax=Methylovorus RepID=C6X8T6_METSD rbh
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 rbh
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
04302015_34_scaffold_1267_10

Not on your lists


4293..4706
DNA (414bp) protein (138aa)
Ribosomal protein L16 n=1 Tax=mine drainage metagenome RepID=T1C056_9ZZZZ
Ribosomal protein L16 {ECO:0000313|EMBL:EQD75397.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
04302015_34_scaffold_1267_11

Not on your lists


4712..4906
DNA (195bp) protein (65aa)
Ribosomal protein L29 n=1 Tax=mine drainage metagenome RepID=T1BR86_9ZZZZ
Ribosomal protein L29 {ECO:0000313|EMBL:EQD75396.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
04302015_34_scaffold_1267_12

Not on your lists


4903..5181
DNA (279bp) protein (93aa)
Ribosomal protein S17, bacterial-type n=1 Tax=mine drainage metagenome RepID=T1CZ09_9ZZZZ
Ribosomal protein S17, bacterial-type {ECO:0000313|EMBL:EQD75395.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
04302015_34_scaffold_1267_13
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5358..5726
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=RL14_LEPCP
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
50S ribosomal protein L14 {ECO:0000255|HAMAP-Rule:MF_01367}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATC
04302015_34_scaffold_1267_14
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5736..6032
DNA (297bp) protein (99aa)
50S ribosomal protein L24 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AB99_9PROT
rplX2; 50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricell
04302015_34_scaffold_1267_15

Not on your lists


6043..6561
DNA (519bp) protein (173aa)
Ribosomal protein L5 n=1 Tax=mine drainage metagenome RepID=T1C3D5_9ZZZZ rbh
Ribosomal protein L5 {ECO:0000313|EMBL:EQD75393.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
04302015_34_scaffold_1267_16
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6563..6868
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GHL9_NITSI
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
04302015_34_scaffold_1267_17

Not on your lists


6886..7281
DNA (396bp) protein (132aa)
30S ribosomal protein S8 (Fragment) n=1 Tax=mine drainage metagenome RepID=T1C053_9ZZZZ
30S ribosomal protein S8 {ECO:0000313|EMBL:EQD75392.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
04302015_34_scaffold_1267_18
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7292..7420
DNA (129bp) protein (43aa)
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
50S ribosomal protein L6 {ECO:0000255|HAMAP-Rule:MF_01365}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromati
04302015_34_scaffold_1267_19

Not on your lists


7452..7796
DNA (345bp) protein (115aa)
50S ribosomal subunit protein L6 n=1 Tax=mine drainage metagenome RepID=T0YFF6_9ZZZZ
50S ribosomal subunit protein L6 {ECO:0000313|EMBL:EQD34121.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rplF; 50S ribosomal protein L6
04302015_34_scaffold_1267_20

Not on your lists


7809..8162
DNA (354bp) protein (118aa)
Ribosomal protein L18, bacterial n=1 Tax=mine drainage metagenome RepID=T0YQT4_9ZZZZ
Ribosomal protein L18, bacterial {ECO:0000313|EMBL:EQD34122.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
04302015_34_scaffold_1267_21

Not on your lists


8188..8697
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=1 Tax=mine drainage metagenome RepID=T0YM15_9ZZZZ rbh
30S ribosomal protein S5 {ECO:0000313|EMBL:EQD34123.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
04302015_34_scaffold_1267_22
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8704..8892
DNA (189bp) protein (63aa)
50S ribosomal protein L30 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8W6_9GAMM
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
Tax=BJP_S1_SUB10_Methylophilales_55_32
04302015_34_scaffold_1267_23
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8910..9341
DNA (432bp) protein (144aa)
50S ribosomal protein L15 n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CP84_SIDLE
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
04302015_34_scaffold_1267_24

Not on your lists


9341..10642
DNA (1302bp) protein (434aa)
Preprotein translocase secY subunit n=1 Tax=mine drainage metagenome RepID=T1C6J3_9ZZZZ rbh
Preprotein translocase secY subunit {ECO:0000313|EMBL:EQD77637.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
04302015_34_scaffold_1267_25

Not on your lists

10654..10872
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=mine drainage metagenome RepID=T1C991_9ZZZZ
Translation initiation factor IF-1 {ECO:0000313|EMBL:EQD77638.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Translation initiation factor IF-1; K02518 translation initiation factor IF-1
04302015_34_scaffold_1267_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10893..11006
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Limnobacter sp. MED105 RepID=A6GPH8_9BURK
rpmJ; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_34_scaffold_1267_27

Not on your lists


11043..11405
DNA (363bp) protein (121aa)
Ribosomal protein S13, bacterial-type n=1 Tax=mine drainage metagenome RepID=T1D8A7_9ZZZZ
Ribosomal protein S13, bacterial-type {ECO:0000313|EMBL:EQD77639.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
04302015_34_scaffold_1267_28

Not on your lists


11422..11817
DNA (396bp) protein (132aa)
Ribosomal protein S11, bacterial-type n=1 Tax=mine drainage metagenome RepID=T1D5U5_9ZZZZ
Ribosomal protein S11, bacterial-type {ECO:0000313|EMBL:EQD77640.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
04302015_34_scaffold_1267_29
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11839..12465
DNA (627bp) protein (209aa)
30S ribosomal protein S4 id=1820615 bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
04302015_34_scaffold_1267_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12505..13491
DNA (987bp) protein (329aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLV5_9PROT rbh
Displaying items 1-30 of 51 in total

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